Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RPS29P27-201ENST00000463711 170 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.88□□□□□ -2.11
DDX28Q9NUL7 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.88□□□□□ -2.11
DDX28Q9NUL7 RNU6-1332P-201ENST00000516666 104 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.88□□□□□ -2.11
DDX28Q9NUL7 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.88□□□□□ -2.11
DDX28Q9NUL7 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.88□□□□□ -2.11
DDX28Q9NUL7 AC109446.1-201ENST00000566172 220 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 AC025754.2-201ENST00000606491 432 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
DDX28Q9NUL7 AL136221.1-201ENST00000621449 509 ntBASIC1.88□□□□□ -2.11
DDX28Q9NUL7 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
DDX28Q9NUL7 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
DDX28Q9NUL7 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.87□□□□□ -2.11
DDX28Q9NUL7 Y_RNA.3-201ENST00000362331 103 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 RNA5SP276-201ENST00000362580 94 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 SNORD114-1-201ENST00000362705 72 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 SNORD115-3-201ENST00000363100 82 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 Y_RNA.99-201ENST00000363138 105 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 RNY4P14-201ENST00000363656 96 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 RNU6-1317P-201ENST00000364582 104 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 Y_RNA.256-201ENST00000364594 104 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
DDX28Q9NUL7 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
DDX28Q9NUL7 SUMO2P12-201ENST00000405924 140 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 AL357139.1-201ENST00000407792 426 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 MIR1289-2-201ENST00000408360 111 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 Y_RNA.615-201ENST00000410769 117 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 MTCO1P21-201ENST00000416634 589 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 RPL31P63-201ENST00000422565 375 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 AC012306.1-201ENST00000423267 114 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.87□□□□□ -2.11
DDX28Q9NUL7 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.87□□□□□ -2.11
DDX28Q9NUL7 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.87□□□□□ -2.11
DDX28Q9NUL7 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.87□□□□□ -2.11
DDX28Q9NUL7 AMD1P1-201ENST00000457220 922 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.87□□□□□ -2.11
DDX28Q9NUL7 AC016957.1-201ENST00000534895 309 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 AC026371.1-201ENST00000551867 419 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 EIF4A1P12-201ENST00000551910 141 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.87□□□□□ -2.11
DDX28Q9NUL7 AC012493.3-201ENST00000604494 112 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 AC005520.5-201ENST00000613926 164 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 FAM157A-202ENST00000615155 405 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.87□□□□□ -2.11
DDX28Q9NUL7 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.87□□□□□ -2.11
DDX28Q9NUL7 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.87□□□□□ -2.11
DDX28Q9NUL7 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
DDX28Q9NUL7 SNORD113-7-201ENST00000363762 77 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 RNU6-1090P-201ENST00000364065 94 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 RNU6-234P-201ENST00000365229 104 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 RNU6-128P-201ENST00000383976 107 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 SNORA36A-201ENST00000384221 132 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 RNU6-378P-201ENST00000384324 107 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 SNRPEP10-201ENST00000420249 274 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 MTND3P9-201ENST00000429526 346 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 MIR449C-201ENST00000516047 92 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 RNU6-991P-201ENST00000516168 107 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 Y_RNA.665-201ENST00000516177 98 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 TPRKBP2-201ENST00000565969 475 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 AC104458.1-201ENST00000608243 463 ntBASIC1.86□□□□□ -2.11
DDX28Q9NUL7 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 RNU6-1164P-201ENST00000364428 107 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 Y_RNA.554-201ENST00000384672 102 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 RNA5SP465-201ENST00000391195 109 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 MIR1283-2-201ENST00000408621 87 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 SNORA11.4-201ENST00000408823 129 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 HMGN2P18-201ENST00000450680 270 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 AC007547.1-201ENST00000462177 490 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 HMGN2P26-201ENST00000463169 339 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 MTCO1P29-201ENST00000496868 288 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 MTND1P35-201ENST00000526739 508 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 MIR3122-201ENST00000577243 73 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 CPDP1-201ENST00000579660 283 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 RPL17P51-201ENST00000605218 238 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 U4.5-201ENST00000617137 123 ntBASIC1.85□□□□□ -2.11
DDX28Q9NUL7 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
DDX28Q9NUL7 AC009487.4-201ENST00000624969 3585 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
DDX28Q9NUL7 ZNF72P-201ENST00000425869 1908 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 RNU1-58P-201ENST00000362413 163 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 Y_RNA.530-201ENST00000384587 101 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 RNU11-3P-201ENST00000391111 133 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 RNU6-332P-201ENST00000391193 108 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 RNU6-325P-201ENST00000411132 105 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 RNU6-373P-201ENST00000411247 98 ntBASIC1.84□□□□□ -2.11
DDX28Q9NUL7 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.84□□□□□ -2.11
DDX28Q9NUL7 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.84□□□□□ -2.11
DDX28Q9NUL7 BX510359.4-201ENST00000423750 193 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms