Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
NPAS1Q99742 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
NPAS1Q99742 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
NPAS1Q99742 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.6□□□□□ -1.99
NPAS1Q99742 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
NPAS1Q99742 RNU1-35P-201ENST00000362782 153 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 Y_RNA.106-201ENST00000363189 100 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 SNORA63-201ENST00000363450 132 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 RNA5SP240-201ENST00000365355 128 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 RNU6-378P-201ENST00000384324 107 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 SNORA69.1-201ENST00000390904 137 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 MIR320B2-201ENST00000408479 138 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 Y_RNA.597-201ENST00000410463 100 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.6□□□□□ -1.99
NPAS1Q99742 AC114482.1-201ENST00000418010 247 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 AC092427.1-202ENST00000430569 476 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 RPS29P6-201ENST00000438196 145 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 Y_RNA.639-201ENST00000458981 102 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 AC080013.2-201ENST00000460866 323 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 AC090096.1-201ENST00000489168 390 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.6□□□□□ -1.99
NPAS1Q99742 RNU6-988P-201ENST00000519081 107 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 AC091144.1-201ENST00000519573 138 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 AC004486.1-201ENST00000546846 233 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 AC079600.2-201ENST00000550076 130 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 EIF4BP1-201ENST00000554881 351 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 MIR5701-3-201ENST00000578890 82 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 MIR5701-1-201ENST00000585138 82 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 AC092447.9-201ENST00000603395 144 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 MIR5701-2-201ENST00000615634 82 ntBASIC2.6□□□□□ -1.99
NPAS1Q99742 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.59□□□□□ -1.99
NPAS1Q99742 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
NPAS1Q99742 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2.59□□□□□ -1.99
NPAS1Q99742 RNU6-1115P-201ENST00000362490 106 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 Y_RNA.39-201ENST00000362620 98 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 RNY3P11-201ENST00000364153 102 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 Y_RNA.319-201ENST00000365138 92 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 Y_RNA.358-201ENST00000365491 99 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 RNU6-1227P-201ENST00000383981 107 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 MIR181A2-201ENST00000384863 110 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 MIR628-201ENST00000385229 95 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 RNU6-220P-201ENST00000390919 107 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 AC096644.2-201ENST00000429278 159 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 AL445305.1-201ENST00000432577 575 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 AL161788.1-201ENST00000441805 169 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 AL035666.1-201ENST00000446195 348 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.59□□□□□ -1.99
NPAS1Q99742 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.59□□□□□ -1.99
NPAS1Q99742 ELOCP31-201ENST00000540463 467 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.59□□□□□ -1.99
NPAS1Q99742 AC090616.3-201ENST00000582184 217 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 MIR3171-201ENST00000584270 74 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 MIR4719-201ENST00000585233 84 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 AL713866.2-201ENST00000603579 219 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 PCGEM1.1-201ENST00000613431 131 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 AC083806.3-201ENST00000614016 455 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.59□□□□□ -1.99
NPAS1Q99742 AC006386.2-201ENST00000624491 75 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 AC012005.1-201ENST00000624575 75 ntBASIC2.59□□□□□ -1.99
NPAS1Q99742 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -2
NPAS1Q99742 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
NPAS1Q99742 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
NPAS1Q99742 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC2.58□□□□□ -2
NPAS1Q99742 Y_RNA.5-201ENST00000362334 102 ntBASIC2.58□□□□□ -2
NPAS1Q99742 Y_RNA.31-201ENST00000362574 102 ntBASIC2.58□□□□□ -2
NPAS1Q99742 SNORD115-32-201ENST00000364079 82 ntBASIC2.58□□□□□ -2
NPAS1Q99742 Y_RNA.202-201ENST00000364083 110 ntBASIC2.58□□□□□ -2
NPAS1Q99742 SNORA9.2-201ENST00000365361 133 ntBASIC2.58□□□□□ -2
NPAS1Q99742 SNORA46.1-201ENST00000391069 153 ntBASIC2.58□□□□□ -2
NPAS1Q99742 SNORA12-201ENST00000391162 147 ntBASIC2.58□□□□□ -2
NPAS1Q99742 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.58□□□□□ -2
NPAS1Q99742 USP9YP16-201ENST00000430287 407 ntBASIC2.58□□□□□ -2
NPAS1Q99742 AC025750.2-201ENST00000442609 450 ntBASIC2.58□□□□□ -2
NPAS1Q99742 AP000705.1-201ENST00000454567 350 ntBASIC2.58□□□□□ -2
NPAS1Q99742 USP9YP23-201ENST00000455085 407 ntBASIC2.58□□□□□ -2
NPAS1Q99742 RN7SKP132-201ENST00000516001 208 ntBASIC2.58□□□□□ -2
NPAS1Q99742 RN7SKP295-201ENST00000517264 153 ntBASIC2.58□□□□□ -2
NPAS1Q99742 EIF4A1P12-201ENST00000551910 141 ntBASIC2.58□□□□□ -2
NPAS1Q99742 AL442663.2-201ENST00000554385 511 ntBASIC2.58□□□□□ -2
NPAS1Q99742 HSBP1P1-201ENST00000555205 166 ntBASIC2.58□□□□□ -2
NPAS1Q99742 AC090517.1-201ENST00000569307 266 ntBASIC2.58□□□□□ -2
NPAS1Q99742 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.58□□□□□ -2
NPAS1Q99742 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.58□□□□□ -2
NPAS1Q99742 AC093732.2-201ENST00000607950 274 ntBASIC2.58□□□□□ -2
NPAS1Q99742 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.58□□□□□ -2
NPAS1Q99742 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.58□□□□□ -2
NPAS1Q99742 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.57□□□□□ -2
NPAS1Q99742 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
NPAS1Q99742 MTND5P16-201ENST00000460269 1703 ntBASIC2.57□□□□□ -2
NPAS1Q99742 ZNF204P-201ENST00000416749 2397 ntBASIC2.57□□□□□ -2
NPAS1Q99742 AC092593.1-201ENST00000515413 1815 ntBASIC2.57□□□□□ -2
NPAS1Q99742 Y_RNA.252-201ENST00000364556 101 ntBASIC2.57□□□□□ -2
NPAS1Q99742 Y_RNA.364-201ENST00000365532 101 ntBASIC2.57□□□□□ -2
NPAS1Q99742 Y_RNA.395-201ENST00000383945 109 ntBASIC2.57□□□□□ -2
NPAS1Q99742 RNU6-17P-201ENST00000384245 107 ntBASIC2.57□□□□□ -2
NPAS1Q99742 RNU6-18P-201ENST00000384527 107 ntBASIC2.57□□□□□ -2
NPAS1Q99742 RNU6-1274P-201ENST00000384557 107 ntBASIC2.57□□□□□ -2
NPAS1Q99742 MIR487A-201ENST00000385009 80 ntBASIC2.57□□□□□ -2
NPAS1Q99742 MIR549A-201ENST00000385268 96 ntBASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms