Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.11□□□□□ -1.91
NUP88Q99567 AL353752.1-201ENST00000454946 260 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 RPL30P10-201ENST00000488148 337 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 AC145146.1-201ENST00000496370 254 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 RNU6-976P-201ENST00000516086 111 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 RNA5SP148-201ENST00000516527 94 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.11□□□□□ -1.91
NUP88Q99567 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.11□□□□□ -1.91
NUP88Q99567 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.11□□□□□ -1.91
NUP88Q99567 AL356280.1-201ENST00000603614 379 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 MIR6817-201ENST00000615588 66 ntBASIC3.11□□□□□ -1.91
NUP88Q99567 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
NUP88Q99567 MIR26A1-201ENST00000362205 77 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 RNA5SP68-201ENST00000363885 119 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 RNU4-76P-201ENST00000364509 141 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
NUP88Q99567 MIR625-201ENST00000385047 85 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 MIR559-201ENST00000385188 96 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 SNORA12.2-201ENST00000391040 156 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 RNU6-1093P-201ENST00000391194 107 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 CEP57L1P1-201ENST00000430943 1201 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.1□□□□□ -1.91
NUP88Q99567 AC090515.1-201ENST00000465295 476 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 AC105758.1-201ENST00000506038 399 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 SNORA9.3-201ENST00000516383 129 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.1□□□□□ -1.91
NUP88Q99567 MIR3616-201ENST00000584070 92 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.1□□□□□ -1.91
NUP88Q99567 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC3.1□□□□□ -1.91
NUP88Q99567 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.1□□□□□ -1.91
NUP88Q99567 MIR5739-201ENST00000619803 80 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 AC069528.2-201ENST00000624849 1991 ntBASIC3.1□□□□□ -1.91
NUP88Q99567 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.1□□□□□ -1.91
NUP88Q99567 Y_RNA.138-201ENST00000363462 102 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 Y_RNA.463-201ENST00000384271 102 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 MIR29B2-201ENST00000385055 81 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 MIR153-2-201ENST00000385225 87 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 MTCYBP2-201ENST00000407745 171 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 MIR1302-11-201ENST00000408051 138 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 MIR1302-9-201ENST00000408365 138 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 MIR1302-10-201ENST00000408734 138 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 RNU2-63P-201ENST00000410792 194 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
NUP88Q99567 AC099799.1-201ENST00000439809 192 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 GSTA11P-201ENST00000452866 669 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 AC080013.2-201ENST00000460866 323 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 SRIP1-201ENST00000489235 288 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.09□□□□□ -1.91
NUP88Q99567 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC3.09□□□□□ -1.91
NUP88Q99567 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.09□□□□□ -1.91
NUP88Q99567 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.09□□□□□ -1.91
NUP88Q99567 SNORD116.3-201ENST00000517176 78 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 RNU6-586P-201ENST00000517265 104 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 HSPE1P18-201ENST00000517602 280 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.09□□□□□ -1.91
NUP88Q99567 SUB1P3-201ENST00000564581 315 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 AC090616.3-201ENST00000582184 217 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 AC010928.2-201ENST00000588017 287 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 AC116312.1-201ENST00000606841 314 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 MIR1302-2-201ENST00000607096 138 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 RMST_6.1-201ENST00000611980 203 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC3.09□□□□□ -1.91
NUP88Q99567 AC008121.3-201ENST00000618726 433 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.09□□□□□ -1.91
NUP88Q99567 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
NUP88Q99567 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
NUP88Q99567 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.08□□□□□ -1.92
NUP88Q99567 SNORD56.5-201ENST00000364281 72 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 Y_RNA.577-201ENST00000384794 101 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 RNU6-220P-201ENST00000390919 107 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 RNU6-308P-201ENST00000390957 107 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 RNU6-1156P-201ENST00000410365 100 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 AL354751.2-201ENST00000415471 210 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.08□□□□□ -1.92
NUP88Q99567 AC104332.2-201ENST00000429959 156 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 AL445687.1-201ENST00000439946 251 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC3.08□□□□□ -1.92
NUP88Q99567 Y_RNA.631-201ENST00000459607 101 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 RPS27AP9-201ENST00000477681 438 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 AC103975.1-201ENST00000482506 483 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 RN7SL297P-201ENST00000483161 293 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 AC096725.1-201ENST00000514266 313 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 RNU7-4P-201ENST00000516961 62 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 RNU6-56P-201ENST00000516986 93 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.08□□□□□ -1.92
NUP88Q99567 AC007536.1-201ENST00000533382 349 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 SNRPGP18-201ENST00000553000 214 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 AC104581.2-201ENST00000572227 430 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 MIR3605-201ENST00000583214 100 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.08□□□□□ -1.92
NUP88Q99567 AL138963.2-201ENST00000605137 226 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 AL355802.3-201ENST00000607571 545 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 MESTIT1_1.1-201ENST00000618871 140 ntBASIC3.08□□□□□ -1.92
NUP88Q99567 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.08□□□□□ -1.92
NUP88Q99567 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.08□□□□□ -1.92
NUP88Q99567 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
NUP88Q99567 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
NUP88Q99567 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.07□□□□□ -1.92
NUP88Q99567 RNU6-1115P-201ENST00000362490 106 ntBASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 161.3 ms