Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS35Q96QK1 AL118558.2-201ENST00000556294 238 ntBASIC1.66□□□□□ -2.14
VPS35Q96QK1 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS35Q96QK1 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS35Q96QK1 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.66□□□□□ -2.14
VPS35Q96QK1 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS35Q96QK1 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.66□□□□□ -2.14
VPS35Q96QK1 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.65□□□□□ -2.14
VPS35Q96QK1 AC009541.1-201ENST00000438279 2662 ntBASIC1.65□□□□□ -2.14
VPS35Q96QK1 RNU6-82P-201ENST00000363970 107 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 RNA5SP363-201ENST00000365072 115 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.65□□□□□ -2.15
VPS35Q96QK1 Y_RNA.409-201ENST00000383990 98 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 SNORA32.2-201ENST00000384049 122 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 MIR208B-201ENST00000401172 77 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS35Q96QK1 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS35Q96QK1 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS35Q96QK1 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS35Q96QK1 RNU6-261P-201ENST00000459506 102 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 AC007547.1-201ENST00000462177 490 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 AC021146.2-201ENST00000504736 556 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 RNU6-1098P-201ENST00000516772 96 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 RNU6-612P-201ENST00000516909 102 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 AC104383.1-201ENST00000530297 370 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 CBX3P4-201ENST00000538909 354 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS35Q96QK1 MTND1P15-201ENST00000579262 949 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 MIR8081-201ENST00000611533 95 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 AC005520.5-201ENST00000613926 164 ntBASIC1.65□□□□□ -2.15
VPS35Q96QK1 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.65□□□□□ -2.15
VPS35Q96QK1 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.65□□□□□ -2.15
VPS35Q96QK1 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.64□□□□□ -2.15
VPS35Q96QK1 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
VPS35Q96QK1 MTND4P23-201ENST00000447723 1363 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.64□□□□□ -2.15
VPS35Q96QK1 MIR340-201ENST00000362125 95 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNU6-1322P-201ENST00000364309 107 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNU4-66P-201ENST00000365199 138 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNU6-438P-201ENST00000365561 103 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNU4-20P-201ENST00000365601 151 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 Y_RNA.378-201ENST00000365652 113 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNU6-38P-201ENST00000384085 107 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNU6-1042P-201ENST00000384204 107 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 AL033519.2-201ENST00000403958 392 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNA5SP100-201ENST00000410903 110 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNA5SP59-201ENST00000410922 110 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 AC012306.1-201ENST00000423267 114 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.64□□□□□ -2.15
VPS35Q96QK1 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNU6-1037P-201ENST00000459571 107 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 TOMM22P6-201ENST00000465035 409 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.64□□□□□ -2.15
VPS35Q96QK1 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.64□□□□□ -2.15
VPS35Q96QK1 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNU5F-4P-201ENST00000516581 114 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNU6-1069P-201ENST00000516612 133 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNU6-405P-201ENST00000516637 110 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 AC087854.1-201ENST00000519706 414 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RNU6-323P-201ENST00000521915 107 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 AC025423.5-201ENST00000550230 219 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.64□□□□□ -2.15
VPS35Q96QK1 AC005786.1-201ENST00000588553 154 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 AC009994.1-201ENST00000606889 253 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 AL136221.1-201ENST00000621449 509 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 AC022513.1-201ENST00000624512 117 ntBASIC1.64□□□□□ -2.15
VPS35Q96QK1 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.64□□□□□ -2.15
VPS35Q96QK1 AC245060.5-201ENST00000610778 3293 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.63□□□□□ -2.15
VPS35Q96QK1 MTND5P26-201ENST00000426018 1752 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 RNA5SP190-201ENST00000365222 118 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.63□□□□□ -2.15
VPS35Q96QK1 SNORA69-201ENST00000383895 132 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
VPS35Q96QK1 AC139712.2-201ENST00000424302 339 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.63□□□□□ -2.15
VPS35Q96QK1 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 RNU7-14P-201ENST00000459331 62 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.63□□□□□ -2.15
VPS35Q96QK1 MTND2P38-201ENST00000522536 667 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 AC104576.1-201ENST00000524225 88 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 AC015712.3-201ENST00000559380 164 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 AC090517.1-201ENST00000569307 266 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 AL357078.3-201ENST00000607528 618 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 AC064836.2-201ENST00000609491 462 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 AC068792.1-201ENST00000621354 417 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 MIR6863-201ENST00000636112 90 ntBASIC1.63□□□□□ -2.15
VPS35Q96QK1 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
VPS35Q96QK1 RNU6-227P-201ENST00000362865 103 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 RNU1-76P-201ENST00000362903 159 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 SNORD116-1-201ENST00000384335 95 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 SNORA12.2-201ENST00000391040 156 ntBASIC1.62□□□□□ -2.15
VPS35Q96QK1 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS35Q96QK1 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC1.62□□□□□ -2.15
VPS35Q96QK1 Y_RNA.654-201ENST00000497848 106 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms