Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL353765.1-201ENST00000605514 183 ntBASIC0.47□□□□□ -2.33
CCDC42Q96M95 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.47□□□□□ -2.33
CCDC42Q96M95 AC106858.1-201ENST00000637497 429 ntBASIC0.47□□□□□ -2.33
CCDC42Q96M95 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.46□□□□□ -2.34
CCDC42Q96M95 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC0.46□□□□□ -2.34
CCDC42Q96M95 AC092268.1-201ENST00000342691 405 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 U3.4-201ENST00000363352 213 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 RNU6-418P-201ENST00000384035 107 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 RNU6-378P-201ENST00000384324 107 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 RNU6-1257P-201ENST00000384625 110 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 RPL21P1-201ENST00000399532 476 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC0.46□□□□□ -2.34
CCDC42Q96M95 CETN4P-201ENST00000432407 469 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.46□□□□□ -2.34
CCDC42Q96M95 AC105758.1-201ENST00000506038 399 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 RNU6-377P-201ENST00000515965 102 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC0.46□□□□□ -2.34
CCDC42Q96M95 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.46□□□□□ -2.34
CCDC42Q96M95 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.46□□□□□ -2.34
CCDC42Q96M95 MIR4714-201ENST00000580728 77 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 MTATP6P3-201ENST00000581686 676 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 AC008521.1-201ENST00000587471 187 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 AC073539.2-201ENST00000597113 165 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 AL356157.2-201ENST00000605122 111 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 AP001596.2-201ENST00000608410 312 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 GHRLOS.1-201ENST00000610995 70 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 SNORD3E-202ENST00000627253 216 ntBASIC0.46□□□□□ -2.34
CCDC42Q96M95 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.45□□□□□ -2.34
CCDC42Q96M95 SNORA33-201ENST00000363664 130 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 SNORD32A-201ENST00000364805 84 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 SNORA24.1-201ENST00000384401 135 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 RNU6-1031P-201ENST00000384773 107 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 MIR10B-201ENST00000385011 110 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.45□□□□□ -2.34
CCDC42Q96M95 MTATP6P20-201ENST00000414147 562 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.45□□□□□ -2.34
CCDC42Q96M95 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.45□□□□□ -2.34
CCDC42Q96M95 USP9YP28-201ENST00000435142 589 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 AC098869.1-201ENST00000481627 292 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 AC091435.1-201ENST00000505442 584 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 AC112206.4-201ENST00000515142 405 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC0.45□□□□□ -2.34
CCDC42Q96M95 RNU6-276P-201ENST00000516114 96 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 RNA5SP337-201ENST00000517007 109 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC0.45□□□□□ -2.34
CCDC42Q96M95 APOOP3-201ENST00000536787 586 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 TMF1P1-201ENST00000576058 373 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.45□□□□□ -2.34
CCDC42Q96M95 AC078795.3-201ENST00000602913 472 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 AC016727.2-201ENST00000603988 621 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 AL031281.1-201ENST00000604049 488 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 AC009994.1-201ENST00000606889 253 ntBASIC0.45□□□□□ -2.34
CCDC42Q96M95 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.45□□□□□ -2.34
CCDC42Q96M95 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC0.45□□□□□ -2.34
CCDC42Q96M95 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.44□□□□□ -2.34
CCDC42Q96M95 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
CCDC42Q96M95 SNORD18A-201ENST00000363753 72 ntBASIC0.44□□□□□ -2.34
CCDC42Q96M95 RNU4-12P-201ENST00000365233 139 ntBASIC0.44□□□□□ -2.34
CCDC42Q96M95 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.44□□□□□ -2.34
CCDC42Q96M95 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.44□□□□□ -2.34
CCDC42Q96M95 AL133396.1-201ENST00000432048 687 ntBASIC0.44□□□□□ -2.34
CCDC42Q96M95 AC092628.1-201ENST00000436250 252 ntBASIC0.44□□□□□ -2.34
CCDC42Q96M95 EEF1A1P39-201ENST00000440791 250 ntBASIC0.44□□□□□ -2.34
CCDC42Q96M95 RBBP4P6-201ENST00000508098 202 ntBASIC0.44□□□□□ -2.34
CCDC42Q96M95 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.44□□□□□ -2.34
CCDC42Q96M95 RNU6-922P-201ENST00000516753 99 ntBASIC0.44□□□□□ -2.34
CCDC42Q96M95 AC090517.1-201ENST00000569307 266 ntBASIC0.44□□□□□ -2.34
CCDC42Q96M95 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC0.44□□□□□ -2.34
CCDC42Q96M95 RNA5SP347-201ENST00000362445 119 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 snoU2-30.2-201ENST00000362805 70 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 RNU6-505P-201ENST00000384427 107 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.43□□□□□ -2.34
CCDC42Q96M95 AC000111.3-201ENST00000433478 193 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 AC002486.1-201ENST00000435098 391 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 AL162395.1-201ENST00000457882 422 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 RPS26P48-201ENST00000491713 339 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 FABP5P5-201ENST00000515537 406 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 SNORA19.3-201ENST00000516165 130 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC0.43□□□□□ -2.34
CCDC42Q96M95 AC091489.2-201ENST00000566263 604 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 AC005520.5-201ENST00000613926 164 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.43□□□□□ -2.34
CCDC42Q96M95 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC0.43□□□□□ -2.34
CCDC42Q96M95 AC023934.1-201ENST00000574529 2389 ntBASIC0.43□□□□□ -2.34
CCDC42Q96M95 RNU6-545P-201ENST00000362681 104 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 RNU6-336P-201ENST00000364891 107 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 SNORD114-22-201ENST00000365423 72 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 RNA5SP109-201ENST00000391010 116 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 MIR300-201ENST00000401138 83 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 AC244023.1-201ENST00000426884 112 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 AC137499.1-201ENST00000427602 88 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC0.42□□□□□ -2.34
CCDC42Q96M95 AL358794.1-201ENST00000445689 381 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC0.42□□□□□ -2.34
CCDC42Q96M95 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC0.42□□□□□ -2.34
CCDC42Q96M95 SRRM1P2-201ENST00000464531 1192 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 RPS29P1-201ENST00000465274 159 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 RNU4-57P-201ENST00000515980 135 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 RNU6-229P-201ENST00000516614 102 ntBASIC0.42□□□□□ -2.34
CCDC42Q96M95 AC024995.1-201ENST00000523014 93 ntBASIC0.42□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms