Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SNORD114-19-201ENST00000363072 75 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 SNORD113-8-201ENST00000363497 74 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 Y_RNA.291-201ENST00000364886 113 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 RNA5SP267-201ENST00000364893 126 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 RNU1-140P-201ENST00000365040 165 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 AP002088.1-201ENST00000382740 395 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 RNU6-937P-201ENST00000384325 106 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 MIR544A-201ENST00000384855 91 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 Y_RNA.602-201ENST00000410535 92 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 Z98742.2-201ENST00000431564 187 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 AL445305.1-201ENST00000432577 575 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 RBMY2UP-201ENST00000453474 324 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 MIR2355-201ENST00000517199 87 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 AP002392.1-201ENST00000537692 208 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 MIR4738-201ENST00000579134 87 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 AC060766.3-201ENST00000591442 263 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 Y_RNA.772-201ENST00000606692 102 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 MIR7515-201ENST00000637837 67 ntBASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.33□□□□□ -1.88
CLIP3Q96DZ5 AL049781.1-201ENST00000623195 3585 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 RNU6-1301P-201ENST00000362724 104 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 RNU6-1010P-201ENST00000362757 107 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 RNU6-805P-201ENST00000365643 106 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 MIR491-201ENST00000384877 84 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 Z82188.1-201ENST00000436709 154 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 RNU7-87P-201ENST00000459343 62 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 RPS4XP22-201ENST00000480755 780 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 AC074198.2-201ENST00000508153 258 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 RNU2-27P-201ENST00000516185 142 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 RN7SKP282-201ENST00000516824 299 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 RNU6-579P-201ENST00000516879 102 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 AP006245.1-201ENST00000522549 120 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 AC087441.2-201ENST00000529141 262 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 AC079598.5-201ENST00000547460 117 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 TGIF1P1-201ENST00000558095 802 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 AL356157.2-201ENST00000605122 111 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 AC073657.2-201ENST00000605661 303 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 AL021368.2-201ENST00000606125 5352 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 AC002543.1-201ENST00000299783 1954 ntBASIC3.32□□□□□ -1.88
CLIP3Q96DZ5 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 Y_RNA.123-201ENST00000363338 102 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 RNU1-33P-201ENST00000364249 162 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 RNU6-290P-201ENST00000365212 101 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 MIR483-201ENST00000385070 76 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 SNORD17-201ENST00000390930 237 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 BTF3L4P2-201ENST00000392798 346 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 AL031121.1-201ENST00000406553 254 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 COX6CP10-201ENST00000416832 224 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 AL358453.1-201ENST00000422522 250 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 AC112771.1-201ENST00000463581 102 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 RNU7-175P-201ENST00000515915 61 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 RNA5SP112-201ENST00000515937 99 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 SNORA25.14-201ENST00000516481 132 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 Y_RNA.706-201ENST00000516933 99 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 AC090617.3-201ENST00000573670 475 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 MIR4659A-201ENST00000580269 81 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 AC010928.2-201ENST00000588017 287 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 AL137843.1-201ENST00000605078 385 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 AC011921.3-201ENST00000605540 361 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 AC011476.5-201ENST00000615594 130 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 AC010329.5-201ENST00000623497 2174 ntBASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.31□□□□□ -1.88
CLIP3Q96DZ5 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 RNY4P28-201ENST00000365281 93 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 RNA5SP240-201ENST00000365355 128 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 SNORD63-201ENST00000384262 68 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 U3.39-201ENST00000408569 239 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 Y_RNA.626-201ENST00000411288 95 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 AC006989.1-201ENST00000427212 131 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 EIF1P2-201ENST00000428233 350 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 RPL39P29-201ENST00000447779 157 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 BX510359.1-201ENST00000456973 237 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 AC010401.1-201ENST00000463867 348 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 RPL30P12-201ENST00000474666 353 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 RPS26P21-201ENST00000475397 348 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 RNU6-861P-201ENST00000516745 106 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 AC068657.1-201ENST00000520807 306 ntBASIC3.3□□□□□ -1.88
CLIP3Q96DZ5 AC024405.2-202ENST00000532731 184 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 170.5 ms