Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MTND1P35-201ENST00000526739 508 ntBASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 AP005639.2-201ENST00000527592 928 ntBASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 DEFB122-202ENST00000569013 197 ntBASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 AC024614.2-201ENST00000577584 372 ntBASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 AC023043.2-201ENST00000589678 1026 ntBASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 CTHRC1P1-201ENST00000605383 469 ntBASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.53□□□□□ -2.16
RPUSD4Q96CM3 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.53□□□□□ -2.17
RPUSD4Q96CM3 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 RNU1-76P-201ENST00000362903 159 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 Y_RNA.414-201ENST00000384011 101 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 RNU6-332P-201ENST00000391193 108 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 AL356320.1-201ENST00000429616 163 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 MTCO3P18-201ENST00000440206 761 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 RPL23AP3-201ENST00000453844 468 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 PPP1R2P5-201ENST00000457256 603 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 SNRPGP7-201ENST00000469016 106 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 AC021146.2-201ENST00000504736 556 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 AC011352.1-201ENST00000512300 793 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 RNU6-1332P-201ENST00000516666 104 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 RNU6-965P-201ENST00000516721 96 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 AP002770.2-201ENST00000543613 532 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 AC010928.2-201ENST00000588017 287 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
RPUSD4Q96CM3 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 RNU1-58P-201ENST00000362413 163 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 RNU4-12P-201ENST00000365233 139 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 RNU6-877P-201ENST00000383868 107 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 SNORA36A-201ENST00000384221 132 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 SNORA12-201ENST00000391162 147 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 RNU1-131P-201ENST00000458943 161 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 AC096745.1-201ENST00000509945 370 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 RNU6-256P-201ENST00000516747 97 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 HSBP1P1-201ENST00000555205 166 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 MIR4299-201ENST00000577899 72 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 Y_RNA.783-201ENST00000613546 102 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 IGHVIII-44-202ENST00000636235 289 ntBASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
RPUSD4Q96CM3 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 RNU4-42P-201ENST00000364738 142 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 Y_RNA.373-201ENST00000365600 103 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 SNORA29-201ENST00000384183 140 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 RNU6-378P-201ENST00000384324 107 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 Y_RNA.510-201ENST00000384511 114 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 RNU6-95P-201ENST00000384697 107 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 AL356432.1-201ENST00000405809 419 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 RN7SKP32-201ENST00000410167 303 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 AL158823.1-201ENST00000418441 478 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 AL513185.2-201ENST00000425543 193 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 MTND3P9-201ENST00000429526 346 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 C8orf59P1-201ENST00000429930 303 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 AL353689.1-201ENST00000438895 199 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 DAP3P1-201ENST00000441522 278 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 FTH1P25-201ENST00000447665 469 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 FGF7P6-202ENST00000451282 293 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 MTND1P11-201ENST00000456661 876 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 MTCYBP18-201ENST00000501056 747 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 RNU6-864P-201ENST00000516256 108 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 IGKV3-31-201ENST00000523109 329 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 MIR3672-201ENST00000584290 82 ntBASIC1.5□□□□□ -2.17
RPUSD4Q96CM3 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 Y_RNA.295-201ENST00000364918 102 ntBASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 RNU6-997P-201ENST00000384725 107 ntBASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 MIR1277-201ENST00000408536 78 ntBASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 AL139156.1-201ENST00000412785 841 ntBASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 AC123900.1-201ENST00000420390 96 ntBASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 EIF1P1-201ENST00000421436 341 ntBASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 EIF4EP2-201ENST00000422816 654 ntBASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 AC096920.1-201ENST00000423991 241 ntBASIC1.49□□□□□ -2.17
RPUSD4Q96CM3 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms