Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 EIF1AXP1-201ENST00000419267 435 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.48□□□□□ -2.01
USP41Q3LFD5 AC096638.1-201ENST00000444678 216 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 AL353752.1-201ENST00000454946 260 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 SNORD5.1-201ENST00000458800 75 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 HMGB1P35-201ENST00000503360 598 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 AC026782.1-201ENST00000512952 449 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 RNU6-559P-201ENST00000516151 98 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 Y_RNA.670-201ENST00000516255 105 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 Y_RNA.708-201ENST00000516950 96 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.48□□□□□ -2.01
USP41Q3LFD5 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 MRPS36P4-201ENST00000534436 298 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 SNRPGP18-201ENST00000553000 214 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 MIR4446-201ENST00000578505 67 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 PISRT1.1-201ENST00000616930 107 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 MIR6873-201ENST00000622788 63 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 SNORA43.4-201ENST00000629559 138 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
USP41Q3LFD5 MTND5P6-201ENST00000422338 1798 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 AP000560.1-201ENST00000624150 1937 ntBASIC2.48□□□□□ -2.01
USP41Q3LFD5 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
USP41Q3LFD5 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
USP41Q3LFD5 Y_RNA.2-201ENST00000362330 96 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 SNORD50.1-201ENST00000362987 71 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 RNU4-56P-201ENST00000364700 142 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 Y_RNA.384-201ENST00000383909 102 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 RNU6-842P-201ENST00000384269 107 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
USP41Q3LFD5 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.47□□□□□ -2.01
USP41Q3LFD5 RNU6-277P-201ENST00000516272 106 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.47□□□□□ -2.01
USP41Q3LFD5 AC023824.2-201ENST00000566185 400 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 MIR3136-201ENST00000583498 78 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 AC011494.1-201ENST00000596454 237 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 AL158827.2-201ENST00000602494 330 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 AL713866.2-201ENST00000603579 219 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 AL034555.1-201ENST00000604816 211 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 MIR5739-201ENST00000619803 80 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 MIR7843-201ENST00000622274 79 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.47□□□□□ -2.01
USP41Q3LFD5 AL691447.3-201ENST00000635020 330 ntBASIC2.47□□□□□ -2.01
USP41Q3LFD5 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.47□□□□□ -2.01
USP41Q3LFD5 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.47□□□□□ -2.01
USP41Q3LFD5 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.47□□□□□ -2.01
USP41Q3LFD5 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.01
USP41Q3LFD5 AC080100.1-201ENST00000624239 5356 ntBASIC2.46□□□□□ -2.01
USP41Q3LFD5 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
USP41Q3LFD5 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
USP41Q3LFD5 RNA5SP432-201ENST00000362480 116 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 Y_RNA.48-201ENST00000362710 103 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 RNU6-784P-201ENST00000384330 106 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 AL591034.2-201ENST00000402839 359 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 AC022028.1-201ENST00000412054 408 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.46□□□□□ -2.02
USP41Q3LFD5 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.46□□□□□ -2.02
USP41Q3LFD5 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.46□□□□□ -2.02
USP41Q3LFD5 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.46□□□□□ -2.02
USP41Q3LFD5 RPL7P42-201ENST00000481005 679 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 AC022447.4-201ENST00000504053 364 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 FGF7P4-201ENST00000509595 295 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 RNU6-1213P-201ENST00000517075 94 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 AC093027.1-201ENST00000546698 429 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.46□□□□□ -2.02
USP41Q3LFD5 AC021231.3-201ENST00000558497 370 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 FRG2DP-202ENST00000566967 323 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 AL355375.2-201ENST00000574825 175 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 MIR5571-201ENST00000577998 113 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 AL078605.1-201ENST00000603529 500 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 LARP7P1-201ENST00000605576 316 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 HMGB1P24-202ENST00000615653 685 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 AC233981.2-201ENST00000611524 1614 ntBASIC2.46□□□□□ -2.02
USP41Q3LFD5 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
USP41Q3LFD5 KPNA2P1-201ENST00000458289 1591 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 RNA5SP125-201ENST00000364843 120 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 RNU6-1286P-201ENST00000383871 107 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 Y_RNA.387-201ENST00000383918 102 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 MT-TD-201ENST00000387419 68 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 SNORA75.4-201ENST00000391278 119 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
USP41Q3LFD5 RNU2-63P-201ENST00000410792 194 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.45□□□□□ -2.02
USP41Q3LFD5 AL590556.1-201ENST00000423231 483 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.45□□□□□ -2.02
USP41Q3LFD5 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.45□□□□□ -2.02
USP41Q3LFD5 AC090096.1-201ENST00000489168 390 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 AC021146.2-201ENST00000504736 556 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 MTND3P22-201ENST00000510932 243 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 RNU6-586P-201ENST00000517265 104 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
USP41Q3LFD5 RAB11AP2-201ENST00000545905 639 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 PRELID2P1-201ENST00000552837 301 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.45□□□□□ -2.02
USP41Q3LFD5 FGF7P1-201ENST00000582820 288 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.45□□□□□ -2.02
USP41Q3LFD5 AL138963.2-201ENST00000605137 226 ntBASIC2.45□□□□□ -2.02
USP41Q3LFD5 AP000654.2-201ENST00000605633 586 ntBASIC2.45□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms