Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 CBX3P6-201ENST00000430257 527 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 AC112220.1-201ENST00000434628 355 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.56□□□□□ -1.84
SF3A1Q15459 MTND4P19-201ENST00000446659 478 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 RNU7-26P-201ENST00000458980 63 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.56□□□□□ -1.84
SF3A1Q15459 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.56□□□□□ -1.84
SF3A1Q15459 AC026470.2-201ENST00000561492 181 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 AC005562.2-201ENST00000618264 111 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 U2.1-201ENST00000618978 145 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 AC091925.1-201ENST00000623204 462 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SF3A1Q15459 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SF3A1Q15459 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC3.56□□□□□ -1.84
SF3A1Q15459 ZNF72P-201ENST00000425869 1908 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.55□□□□□ -1.84
SF3A1Q15459 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
SF3A1Q15459 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
SF3A1Q15459 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
SF3A1Q15459 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
SF3A1Q15459 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
SF3A1Q15459 Y_RNA.148-201ENST00000363557 117 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 RNU6-873P-201ENST00000363833 107 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 SNORD115-8-201ENST00000363856 82 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 Y_RNA.202-201ENST00000364083 110 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 SNORD115-38-201ENST00000365037 82 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 RNU6-546P-201ENST00000383991 107 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 Y_RNA.557-201ENST00000384680 107 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 RNA5SP274-201ENST00000410484 108 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 RN7SKP123-201ENST00000410732 291 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 AC007215.1-201ENST00000464893 276 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 SNORA25.14-201ENST00000516481 132 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 AC109329.2-201ENST00000519658 482 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 AL442663.2-201ENST00000554385 511 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 HSBP1P1-201ENST00000555205 166 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.55□□□□□ -1.84
SF3A1Q15459 AC016925.2-201ENST00000605108 242 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 AC005296.1-201ENST00000616145 209 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 AL132822.1-201ENST00000617063 513 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 MIR4272-201ENST00000635924 64 ntBASIC3.55□□□□□ -1.84
SF3A1Q15459 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.54□□□□□ -1.84
SF3A1Q15459 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
SF3A1Q15459 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
SF3A1Q15459 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.54□□□□□ -1.84
SF3A1Q15459 RNU6-137P-201ENST00000363680 108 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 RNU6-280P-201ENST00000364145 104 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 RNU6-879P-201ENST00000364328 108 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 SNORD15B-201ENST00000384714 146 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 MIR95-201ENST00000385072 81 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 RNU6-159P-201ENST00000391080 106 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 RNU1-139P-201ENST00000391307 165 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 RPL21P75-201ENST00000396599 483 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 RPL21P28-201ENST00000401418 483 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 AC005326.1-201ENST00000429197 123 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 AL160004.2-201ENST00000432935 350 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 RN7SL863P-201ENST00000462370 296 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 RPL21P39-201ENST00000463605 483 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 AC087190.1-201ENST00000484462 480 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 RN7SL283P-201ENST00000489055 303 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 AC093591.1-201ENST00000491435 481 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 RPL21P16-201ENST00000495531 483 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 SNORA25.10-201ENST00000515926 124 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 MIR5006-201ENST00000583027 110 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 AL356575.1-201ENST00000603008 283 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.54□□□□□ -1.84
SF3A1Q15459 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.54□□□□□ -1.84
SF3A1Q15459 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.54□□□□□ -1.84
SF3A1Q15459 AL138825.1-201ENST00000618587 192 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 AL606534.2-204ENST00000635008 178 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.54□□□□□ -1.84
SF3A1Q15459 AC093831.2-201ENST00000624393 3427 ntBASIC3.54□□□□□ -1.84
SF3A1Q15459 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
SF3A1Q15459 SNORA7.4-201ENST00000384249 137 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 MIR10B-201ENST00000385011 110 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 SNORA26.7-201ENST00000391288 122 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.53□□□□□ -1.84
SF3A1Q15459 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.53□□□□□ -1.84
SF3A1Q15459 U8.22-201ENST00000459141 133 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 AC109925.1-201ENST00000478069 331 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 RN7SL20P-201ENST00000488827 297 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 RNU5F-4P-201ENST00000516581 114 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 RNU4-77P-201ENST00000516692 156 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 UBL5P2-201ENST00000583788 219 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 AC040896.1-201ENST00000613819 479 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 SCARNA15.3-201ENST00000626315 122 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 SCARNA4.1-201ENST00000628597 123 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 BX322639.1-202ENST00000423987 2213 ntBASIC3.53□□□□□ -1.84
SF3A1Q15459 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.53□□□□□ -1.84
SF3A1Q15459 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.53□□□□□ -1.84
SF3A1Q15459 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.52□□□□□ -1.85
SF3A1Q15459 AC108206.1-201ENST00000570186 4159 ntBASIC3.52□□□□□ -1.85
SF3A1Q15459 RNU5F-3P-201ENST00000363767 117 ntBASIC3.52□□□□□ -1.85
SF3A1Q15459 RNU6-743P-201ENST00000364151 106 ntBASIC3.52□□□□□ -1.85
SF3A1Q15459 RNU6-26P-201ENST00000383985 107 ntBASIC3.52□□□□□ -1.85
SF3A1Q15459 MIR128-1-201ENST00000384921 82 ntBASIC3.52□□□□□ -1.85
SF3A1Q15459 MIR561-201ENST00000385216 97 ntBASIC3.52□□□□□ -1.85
SF3A1Q15459 SNORD67-201ENST00000390833 111 ntBASIC3.52□□□□□ -1.85
SF3A1Q15459 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms