Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC008507.2-201ENST00000588402 1176 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AL158042.1-201ENST00000605338 460 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 AC009509.4-201ENST00000619202 509 ntBASIC0.42□□□□□ -2.34
CHD3Q12873 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.41□□□□□ -2.34
CHD3Q12873 RNU6-418P-201ENST00000384035 107 ntBASIC0.41□□□□□ -2.34
CHD3Q12873 Y_RNA.578-201ENST00000390903 88 ntBASIC0.41□□□□□ -2.34
CHD3Q12873 RNA5SP467-201ENST00000391274 118 ntBASIC0.41□□□□□ -2.34
CHD3Q12873 RPS20P2-201ENST00000402520 389 ntBASIC0.41□□□□□ -2.34
CHD3Q12873 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.41□□□□□ -2.34
CHD3Q12873 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.41□□□□□ -2.34
CHD3Q12873 CTHRC1P1-201ENST00000605383 469 ntBASIC0.41□□□□□ -2.34
CHD3Q12873 AC121334.2-201ENST00000605387 271 ntBASIC0.41□□□□□ -2.34
CHD3Q12873 AC024060.1-201ENST00000607052 494 ntBASIC0.41□□□□□ -2.34
CHD3Q12873 TCL6_2.1-201ENST00000615162 119 ntBASIC0.41□□□□□ -2.34
CHD3Q12873 AL138960.2-201ENST00000625145 535 ntBASIC0.41□□□□□ -2.34
CHD3Q12873 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
CHD3Q12873 AL445523.1-201ENST00000451184 1362 ntBASIC0.41□□□□□ -2.34
CHD3Q12873 RNU6-296P-201ENST00000384608 107 ntBASIC0.4□□□□□ -2.34
CHD3Q12873 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.4□□□□□ -2.34
CHD3Q12873 RAP1BP3-201ENST00000407180 549 ntBASIC0.4□□□□□ -2.34
CHD3Q12873 HSPE1P9-201ENST00000440046 311 ntBASIC0.4□□□□□ -2.34
CHD3Q12873 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC0.4□□□□□ -2.34
CHD3Q12873 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.4□□□□□ -2.34
CHD3Q12873 AC097473.1-201ENST00000508142 408 ntBASIC0.4□□□□□ -2.34
CHD3Q12873 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.4□□□□□ -2.34
CHD3Q12873 AL121579.1-201ENST00000555129 305 ntBASIC0.4□□□□□ -2.34
CHD3Q12873 Z69720.2-201ENST00000624755 279 ntBASIC0.4□□□□□ -2.34
CHD3Q12873 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.4□□□□□ -2.35
CHD3Q12873 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
CHD3Q12873 RNU6-212P-201ENST00000362642 104 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 RNU6-25P-201ENST00000383873 107 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 RNU6-48P-201ENST00000384161 107 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 RNU6-15P-201ENST00000384534 107 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 RNU6-29P-201ENST00000384637 107 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 MIR10A-201ENST00000385043 110 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 MIR518A1-201ENST00000385068 85 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 SNORA26.3-201ENST00000391119 136 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 MRPL35P1-201ENST00000404272 572 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 AC019070.1-201ENST00000415008 1024 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 MTND5P2-201ENST00000442927 1142 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.4□□□□□ -2.35
CHD3Q12873 RAP1BP2-201ENST00000478270 544 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.4□□□□□ -2.35
CHD3Q12873 SNORA43.2-201ENST00000516652 128 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 AC136628.3-201ENST00000521868 290 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC0.4□□□□□ -2.35
CHD3Q12873 CYP4A27P-201ENST00000567218 190 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 AC002400.1-201ENST00000569310 726 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 MIR5692A1-201ENST00000580523 69 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 MTCO2P2-201ENST00000591258 225 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC0.4□□□□□ -2.35
CHD3Q12873 MIR338-201ENST00000636369 67 ntBASIC0.4□□□□□ -2.35
CHD3Q12873 MIR329-2-201ENST00000385029 84 ntBASIC0.39□□□□□ -2.35
CHD3Q12873 RNA5SP299-201ENST00000391203 116 ntBASIC0.39□□□□□ -2.35
CHD3Q12873 ZNF736P1Y-201ENST00000440402 1276 ntBASIC0.39□□□□□ -2.35
CHD3Q12873 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.39□□□□□ -2.35
CHD3Q12873 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.39□□□□□ -2.35
CHD3Q12873 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.39□□□□□ -2.35
CHD3Q12873 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.39□□□□□ -2.35
CHD3Q12873 SNORA31.2-201ENST00000516019 134 ntBASIC0.39□□□□□ -2.35
CHD3Q12873 SNORD111.1-201ENST00000516421 86 ntBASIC0.39□□□□□ -2.35
CHD3Q12873 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC0.39□□□□□ -2.35
CHD3Q12873 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.39□□□□□ -2.35
CHD3Q12873 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC0.39□□□□□ -2.35
CHD3Q12873 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
CHD3Q12873 AC005520.5-201ENST00000613926 164 ntBASIC0.39□□□□□ -2.35
CHD3Q12873 RMST_4.1-201ENST00000616886 107 ntBASIC0.39□□□□□ -2.35
CHD3Q12873 AC126177.8-201ENST00000618339 1015 ntBASIC0.39□□□□□ -2.35
CHD3Q12873 ZNF736P9Y-201ENST00000439586 1345 ntBASIC0.39□□□□□ -2.35
CHD3Q12873 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
CHD3Q12873 RNU6-562P-201ENST00000362731 107 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 RNY4P24-201ENST00000362735 96 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 SNORD31B-201ENST00000364977 69 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 RNU6-61P-201ENST00000365528 109 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 RNU6-378P-201ENST00000384324 107 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 SNORD115.1-201ENST00000391109 76 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.38□□□□□ -2.35
CHD3Q12873 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.38□□□□□ -2.35
CHD3Q12873 CALM2P2-201ENST00000428512 440 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 AL591043.1-201ENST00000432461 424 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 SNAP23P1-201ENST00000433229 246 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.38□□□□□ -2.35
CHD3Q12873 GAPDHP17-201ENST00000449858 1001 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 RPS26P48-201ENST00000491713 339 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 TRBVA-201ENST00000498804 316 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 AC116353.3-201ENST00000511215 249 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 RNA5SP168-201ENST00000516642 112 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC0.38□□□□□ -2.35
CHD3Q12873 MIR3923-201ENST00000579521 83 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC0.38□□□□□ -2.35
CHD3Q12873 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC0.38□□□□□ -2.35
CHD3Q12873 AC107304.1-201ENST00000604229 296 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 AC040896.1-201ENST00000613819 479 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 uc_338.11-201ENST00000619132 160 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 U4.7-201ENST00000638126 106 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 RNU6-527P-201ENST00000363425 104 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 MIR1912-201ENST00000410389 80 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 MTND3P17-201ENST00000416968 344 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 MTCO3P29-201ENST00000432119 779 ntBASIC0.38□□□□□ -2.35
CHD3Q12873 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms