Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 RNU6-658P-201ENST00000384606 106 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 RNU6-21P-201ENST00000384710 107 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 MIR518D-201ENST00000385014 87 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 RNU4-30P-201ENST00000410245 143 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.08□□□□□ -1.92
COL4A3Q01955 AC096638.1-201ENST00000444678 216 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 HMGN1P18-201ENST00000457642 277 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 AP000870.1-201ENST00000472927 406 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.08□□□□□ -1.92
COL4A3Q01955 RNU6-1114P-201ENST00000516022 107 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 RNU6-861P-201ENST00000516745 106 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 Y_RNA.703-201ENST00000516846 111 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 RNU6-255P-201ENST00000516957 105 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 DEFB122-202ENST00000569013 197 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 AL162424.1-201ENST00000602325 221 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 AL110115.1-201ENST00000614396 364 ntBASIC3.08□□□□□ -1.92
COL4A3Q01955 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.07□□□□□ -1.92
COL4A3Q01955 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
COL4A3Q01955 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.07□□□□□ -1.92
COL4A3Q01955 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A3Q01955 RNU6-217P-201ENST00000384164 104 ntBASIC3.07□□□□□ -1.92
COL4A3Q01955 Y_RNA.506-201ENST00000384494 102 ntBASIC3.07□□□□□ -1.92
COL4A3Q01955 RNU6-125P-201ENST00000384505 107 ntBASIC3.07□□□□□ -1.92
COL4A3Q01955 RPL23AP48-201ENST00000406913 488 ntBASIC3.07□□□□□ -1.92
COL4A3Q01955 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.07□□□□□ -1.92
COL4A3Q01955 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC3.07□□□□□ -1.92
COL4A3Q01955 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.07□□□□□ -1.92
COL4A3Q01955 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.07□□□□□ -1.92
COL4A3Q01955 AF186996.7-201ENST00000492781 209 ntBASIC3.07□□□□□ -1.92
COL4A3Q01955 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.07□□□□□ -1.92
COL4A3Q01955 Y_RNA.679-201ENST00000516416 91 ntBASIC3.07□□□□□ -1.92
COL4A3Q01955 RNU7-110P-201ENST00000516891 62 ntBASIC3.07□□□□□ -1.92
COL4A3Q01955 U2.21-201ENST00000637295 81 ntBASIC3.07□□□□□ -1.92
COL4A3Q01955 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL4A3Q01955 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.07□□□□□ -1.92
COL4A3Q01955 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
COL4A3Q01955 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC3.06□□□□□ -1.92
COL4A3Q01955 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.06□□□□□ -1.92
COL4A3Q01955 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL4A3Q01955 RNU1-75P-201ENST00000347264 129 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 RNU6-778P-201ENST00000363269 103 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 RNU6-682P-201ENST00000363843 106 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 RNU1-73P-201ENST00000383971 164 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 RNU6-1145P-201ENST00000384246 107 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 RNU6-1140P-201ENST00000410517 106 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 RNA5SP508-201ENST00000411327 119 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.06□□□□□ -1.92
COL4A3Q01955 AC005002.2-201ENST00000438228 269 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 AC125238.1-201ENST00000448842 249 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 snoU13.15-201ENST00000459407 104 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 AC073901.1-201ENST00000462471 408 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 RN7SL20P-201ENST00000488827 297 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 AC016256.1-201ENST00000547971 354 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 ZNF192P1-203ENST00000565888 810 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 AC008749.1-201ENST00000597650 306 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 MZT1P2-201ENST00000604387 248 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.06□□□□□ -1.92
COL4A3Q01955 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL4A3Q01955 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.06□□□□□ -1.92
COL4A3Q01955 AC000403.1-201ENST00000613696 3585 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 AC135776.4-201ENST00000624300 1904 ntBASIC3.06□□□□□ -1.92
COL4A3Q01955 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL4A3Q01955 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL4A3Q01955 SNORD56.3-201ENST00000363507 71 ntBASIC3.05□□□□□ -1.92
COL4A3Q01955 SNORA7.2-201ENST00000364446 145 ntBASIC3.05□□□□□ -1.92
COL4A3Q01955 Y_RNA.286-201ENST00000364813 102 ntBASIC3.05□□□□□ -1.92
COL4A3Q01955 SNORD15B-201ENST00000384714 146 ntBASIC3.05□□□□□ -1.92
COL4A3Q01955 MIR544A-201ENST00000384855 91 ntBASIC3.05□□□□□ -1.92
COL4A3Q01955 RNU6-482P-201ENST00000391068 107 ntBASIC3.05□□□□□ -1.92
COL4A3Q01955 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.05□□□□□ -1.92
COL4A3Q01955 VDAC1P3-201ENST00000434069 851 ntBASIC3.05□□□□□ -1.92
COL4A3Q01955 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.05□□□□□ -1.92
COL4A3Q01955 AC006539.3-201ENST00000454258 129 ntBASIC3.05□□□□□ -1.92
COL4A3Q01955 Y_RNA.683-201ENST00000516508 93 ntBASIC3.05□□□□□ -1.92
COL4A3Q01955 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.05□□□□□ -1.92
COL4A3Q01955 AC020895.1-201ENST00000595362 272 ntBASIC3.05□□□□□ -1.92
COL4A3Q01955 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.05□□□□□ -1.92
COL4A3Q01955 AC132825.6-201ENST00000638861 357 ntBASIC3.05□□□□□ -1.92
COL4A3Q01955 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
COL4A3Q01955 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.05□□□□□ -1.92
COL4A3Q01955 RNU6-858P-201ENST00000362436 107 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 SNORD56.1-201ENST00000362913 68 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 RNU5B-2P-201ENST00000363036 113 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 SNORD32A-201ENST00000364805 84 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 RNU6-20P-201ENST00000384106 107 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 RNU6-493P-201ENST00000391321 108 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 Y_RNA.590-201ENST00000410140 107 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 RNU6-651P-201ENST00000411040 105 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 AL390729.2-201ENST00000416137 156 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.04□□□□□ -1.92
COL4A3Q01955 AC108210.2-201ENST00000503681 201 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 AC091874.1-201ENST00000511402 339 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 RNU6-1278P-201ENST00000516130 107 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 RNU6-58P-201ENST00000517143 103 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.04□□□□□ -1.92
COL4A3Q01955 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.04□□□□□ -1.92
COL4A3Q01955 AC072026.1-201ENST00000605023 201 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.04□□□□□ -1.92
COL4A3Q01955 AC080128.1-201ENST00000474389 1917 ntBASIC3.04□□□□□ -1.92
COL4A3Q01955 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms