Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.35□□□□□ -2.03
MSH2P43246 MTND4P18-201ENST00000447010 465 ntBASIC2.35□□□□□ -2.03
MSH2P43246 MTND5P20-201ENST00000448677 143 ntBASIC2.35□□□□□ -2.03
MSH2P43246 SNORD5.1-201ENST00000458800 75 ntBASIC2.35□□□□□ -2.03
MSH2P43246 AC055731.1-201ENST00000474387 401 ntBASIC2.35□□□□□ -2.03
MSH2P43246 AC079804.2-201ENST00000490376 200 ntBASIC2.35□□□□□ -2.03
MSH2P43246 AC091951.2-201ENST00000500762 203 ntBASIC2.35□□□□□ -2.03
MSH2P43246 RNA5SP148-201ENST00000516527 94 ntBASIC2.35□□□□□ -2.03
MSH2P43246 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.35□□□□□ -2.03
MSH2P43246 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.35□□□□□ -2.03
MSH2P43246 MRPS36P4-201ENST00000534436 298 ntBASIC2.35□□□□□ -2.03
MSH2P43246 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC2.35□□□□□ -2.03
MSH2P43246 MIR4529-201ENST00000578110 78 ntBASIC2.35□□□□□ -2.03
MSH2P43246 Z98751.3-201ENST00000604447 521 ntBASIC2.35□□□□□ -2.03
MSH2P43246 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
MSH2P43246 AC016717.2-201ENST00000609089 5141 ntBASIC2.35□□□□□ -2.03
MSH2P43246 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
MSH2P43246 AL596028.1-201ENST00000326971 197 ntBASIC2.34□□□□□ -2.03
MSH2P43246 RNU6-593P-201ENST00000364716 112 ntBASIC2.34□□□□□ -2.03
MSH2P43246 RNU6-596P-201ENST00000365395 98 ntBASIC2.34□□□□□ -2.03
MSH2P43246 RNU6-968P-201ENST00000384076 107 ntBASIC2.34□□□□□ -2.03
MSH2P43246 SNORA29-201ENST00000384183 140 ntBASIC2.34□□□□□ -2.03
MSH2P43246 Y_RNA.500-201ENST00000384466 111 ntBASIC2.34□□□□□ -2.03
MSH2P43246 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
MSH2P43246 AL355497.1-201ENST00000406262 551 ntBASIC2.34□□□□□ -2.03
MSH2P43246 MTCYBP2-201ENST00000407745 171 ntBASIC2.34□□□□□ -2.03
MSH2P43246 RNU2-32P-201ENST00000411193 191 ntBASIC2.34□□□□□ -2.03
MSH2P43246 EIF4EP2-201ENST00000422816 654 ntBASIC2.34□□□□□ -2.03
MSH2P43246 AC079354.2-201ENST00000453523 154 ntBASIC2.34□□□□□ -2.03
MSH2P43246 SNORA59A-201ENST00000459326 152 ntBASIC2.34□□□□□ -2.03
MSH2P43246 UBE2DNL-203ENST00000474922 222 ntBASIC2.34□□□□□ -2.03
MSH2P43246 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.34□□□□□ -2.03
MSH2P43246 AC145146.1-201ENST00000496370 254 ntBASIC2.34□□□□□ -2.03
MSH2P43246 AC021146.2-201ENST00000504736 556 ntBASIC2.34□□□□□ -2.03
MSH2P43246 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.34□□□□□ -2.03
MSH2P43246 RNU6-1016P-201ENST00000516689 94 ntBASIC2.34□□□□□ -2.03
MSH2P43246 RNU6-567P-201ENST00000516746 107 ntBASIC2.34□□□□□ -2.03
MSH2P43246 RNU2-19P-201ENST00000517288 84 ntBASIC2.34□□□□□ -2.03
MSH2P43246 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.34□□□□□ -2.03
MSH2P43246 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.34□□□□□ -2.03
MSH2P43246 AC026271.5-201ENST00000577873 130 ntBASIC2.34□□□□□ -2.03
MSH2P43246 MIR3923-201ENST00000579521 83 ntBASIC2.34□□□□□ -2.03
MSH2P43246 AC243960.4-201ENST00000600532 288 ntBASIC2.34□□□□□ -2.03
MSH2P43246 AC018462.2-201ENST00000605375 395 ntBASIC2.34□□□□□ -2.03
MSH2P43246 AC063943.3-201ENST00000615562 356 ntBASIC2.34□□□□□ -2.03
MSH2P43246 AP000553.5-201ENST00000641933 54 ntBASIC2.34□□□□□ -2.03
MSH2P43246 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
MSH2P43246 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.34□□□□□ -2.04
MSH2P43246 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.34□□□□□ -2.04
MSH2P43246 MTND4P12-201ENST00000498999 1377 ntBASIC2.34□□□□□ -2.04
MSH2P43246 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
MSH2P43246 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
MSH2P43246 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.33□□□□□ -2.04
MSH2P43246 RNU5B-2P-201ENST00000363036 113 ntBASIC2.33□□□□□ -2.04
MSH2P43246 Y_RNA.142-201ENST00000363491 102 ntBASIC2.33□□□□□ -2.04
MSH2P43246 RNU6-1059P-201ENST00000363752 98 ntBASIC2.33□□□□□ -2.04
MSH2P43246 RNU6-944P-201ENST00000364023 107 ntBASIC2.33□□□□□ -2.04
MSH2P43246 RNU6-546P-201ENST00000383991 107 ntBASIC2.33□□□□□ -2.04
MSH2P43246 RNU6-301P-201ENST00000384277 107 ntBASIC2.33□□□□□ -2.04
MSH2P43246 Y_RNA.482-201ENST00000384377 111 ntBASIC2.33□□□□□ -2.04
MSH2P43246 RNA5SP201-201ENST00000410316 124 ntBASIC2.33□□□□□ -2.04
MSH2P43246 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.33□□□□□ -2.04
MSH2P43246 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC2.33□□□□□ -2.04
MSH2P43246 AL590556.1-201ENST00000423231 483 ntBASIC2.33□□□□□ -2.04
MSH2P43246 AC012306.1-201ENST00000423267 114 ntBASIC2.33□□□□□ -2.04
MSH2P43246 RPS15AP28-201ENST00000435088 386 ntBASIC2.33□□□□□ -2.04
MSH2P43246 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.33□□□□□ -2.04
MSH2P43246 AL513124.1-201ENST00000450410 614 ntBASIC2.33□□□□□ -2.04
MSH2P43246 MTND4P17-201ENST00000470444 350 ntBASIC2.33□□□□□ -2.04
MSH2P43246 AC026782.1-201ENST00000512952 449 ntBASIC2.33□□□□□ -2.04
MSH2P43246 RNU6-875P-201ENST00000516488 106 ntBASIC2.33□□□□□ -2.04
MSH2P43246 Y_RNA.702-201ENST00000516843 96 ntBASIC2.33□□□□□ -2.04
MSH2P43246 AC105029.1-201ENST00000520250 669 ntBASIC2.33□□□□□ -2.04
MSH2P43246 AC021269.2-201ENST00000532318 330 ntBASIC2.33□□□□□ -2.04
MSH2P43246 NDUFA5P6-201ENST00000542110 379 ntBASIC2.33□□□□□ -2.04
MSH2P43246 AC009318.2-201ENST00000610917 651 ntBASIC2.33□□□□□ -2.04
MSH2P43246 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.33□□□□□ -2.04
MSH2P43246 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.33□□□□□ -2.04
MSH2P43246 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.32□□□□□ -2.04
MSH2P43246 AP006437.1-201ENST00000641440 3685 ntBASIC2.32□□□□□ -2.04
MSH2P43246 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
MSH2P43246 AC233981.2-201ENST00000611524 1614 ntBASIC2.32□□□□□ -2.04
MSH2P43246 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.32□□□□□ -2.04
MSH2P43246 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
MSH2P43246 RNU6-842P-201ENST00000384269 107 ntBASIC2.32□□□□□ -2.04
MSH2P43246 RNU6-601P-201ENST00000384540 107 ntBASIC2.32□□□□□ -2.04
MSH2P43246 SNORA46.1-201ENST00000391069 153 ntBASIC2.32□□□□□ -2.04
MSH2P43246 HMGN2P39-201ENST00000398005 273 ntBASIC2.32□□□□□ -2.04
MSH2P43246 RNU6-174P-201ENST00000410406 106 ntBASIC2.32□□□□□ -2.04
MSH2P43246 Y_RNA.597-201ENST00000410463 100 ntBASIC2.32□□□□□ -2.04
MSH2P43246 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.32□□□□□ -2.04
MSH2P43246 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.32□□□□□ -2.04
MSH2P43246 AL137159.1-201ENST00000452808 512 ntBASIC2.32□□□□□ -2.04
MSH2P43246 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC2.32□□□□□ -2.04
MSH2P43246 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.32□□□□□ -2.04
MSH2P43246 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.32□□□□□ -2.04
MSH2P43246 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.32□□□□□ -2.04
MSH2P43246 CYP4A27P-201ENST00000567218 190 ntBASIC2.32□□□□□ -2.04
MSH2P43246 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.32□□□□□ -2.04
MSH2P43246 MIR4672-201ENST00000583126 81 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 145.9 ms