Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC063976.3-201ENST00000426849 329 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 AC078809.1-201ENST00000427601 140 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 AC244670.1-201ENST00000436879 112 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 RPL39P40-201ENST00000445481 146 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 AC016632.1-201ENST00000503994 196 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 RNA5SP356-201ENST00000515972 94 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 RNU7-4P-201ENST00000516961 62 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 AC023442.1-201ENST00000531247 422 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC3.14□□□□□ -1.91
SMARCA1P28370 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.14□□□□□ -1.91
SMARCA1P28370 AL078605.1-201ENST00000603529 500 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 AL359198.2-201ENST00000611836 194 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 SCARNA4-201ENST00000629045 128 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 MIR4272-201ENST00000635924 64 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.14□□□□□ -1.91
SMARCA1P28370 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
SMARCA1P28370 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
SMARCA1P28370 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
SMARCA1P28370 AC005592.1-201ENST00000566527 1640 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 Y_RNA.39-201ENST00000362620 98 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 RNU6-1010P-201ENST00000362757 107 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 U3.13-201ENST00000364804 214 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 AC117470.1-201ENST00000381974 330 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 RNU6-142P-201ENST00000384019 107 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 MIR627-201ENST00000384979 97 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 MIR625-201ENST00000385047 85 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 MIR190B-201ENST00000401119 79 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 AL590004.2-201ENST00000404787 371 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.13□□□□□ -1.91
SMARCA1P28370 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.13□□□□□ -1.91
SMARCA1P28370 AC007098.1-201ENST00000420122 367 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 RPS15AP7-201ENST00000439294 405 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 GPM6BP3-201ENST00000442797 145 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.13□□□□□ -1.91
SMARCA1P28370 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.13□□□□□ -1.91
SMARCA1P28370 snoU13.30-201ENST00000458951 104 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 RNU7-169P-201ENST00000459456 61 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 RNU7-175P-201ENST00000515915 61 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.13□□□□□ -1.91
SMARCA1P28370 COX6CP5-201ENST00000527162 228 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC3.13□□□□□ -1.91
SMARCA1P28370 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.13□□□□□ -1.91
SMARCA1P28370 AC105137.2-201ENST00000569073 466 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 AC103810.1-201ENST00000579873 453 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 AC008737.2-201ENST00000599446 118 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 AC007792.1-201ENST00000623023 402 ntBASIC3.13□□□□□ -1.91
SMARCA1P28370 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
SMARCA1P28370 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
SMARCA1P28370 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
SMARCA1P28370 AC002543.1-201ENST00000299783 1954 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 AL109809.4-201ENST00000603520 2185 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.12□□□□□ -1.91
SMARCA1P28370 AC062016.1-201ENST00000355719 319 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 SNORD114-19-201ENST00000363072 75 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 Y_RNA.145-201ENST00000363527 102 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 RNU6-1180P-201ENST00000364935 107 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 Y_RNA.527-201ENST00000384573 102 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 MIR181B1-201ENST00000385240 110 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 SNORA26.3-201ENST00000391119 136 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 MTCYBP2-201ENST00000407745 171 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 RNA5SP184-201ENST00000411071 108 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SMARCA1P28370 AC112771.1-201ENST00000463581 102 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 TOMM22P6-201ENST00000465035 409 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 AC087477.1-201ENST00000465747 340 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 AC021146.2-201ENST00000504736 556 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.12□□□□□ -1.91
SMARCA1P28370 RNA5SP282-201ENST00000516355 108 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 SNORA31.16-201ENST00000516773 139 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.12□□□□□ -1.91
SMARCA1P28370 GNAI2P1-201ENST00000541815 315 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 AC016256.1-201ENST00000547971 354 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 AC096772.1-201ENST00000609146 564 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 AL162373.1-201ENST00000620433 407 ntBASIC3.12□□□□□ -1.91
SMARCA1P28370 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
SMARCA1P28370 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
SMARCA1P28370 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.11□□□□□ -1.91
SMARCA1P28370 AC092268.1-201ENST00000342691 405 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 SNORD88.1-201ENST00000408684 91 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 RNU6-985P-201ENST00000410182 104 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 Y_RNA.605-201ENST00000410577 105 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 CYCSP48-201ENST00000417124 323 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 AIMP1P2-201ENST00000425294 312 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 Z98742.2-201ENST00000431564 187 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 MICF-203ENST00000432679 129 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 OR2AQ1P-201ENST00000451972 200 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.11□□□□□ -1.91
SMARCA1P28370 AP000705.1-201ENST00000454567 350 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 AC112492.4-201ENST00000456549 352 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 RPL36AP48-201ENST00000485521 314 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.11□□□□□ -1.91
SMARCA1P28370 SNORA25.11-201ENST00000515935 105 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.11□□□□□ -1.91
SMARCA1P28370 AC079598.5-201ENST00000547460 117 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 MIR5188-201ENST00000583467 113 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 7SK.7-201ENST00000603504 247 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.11□□□□□ -1.91
SMARCA1P28370 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC3.11□□□□□ -1.91
SMARCA1P28370 MAPK10-266ENST00000641066 6555 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 152 ms