Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC0.63□□□□□ -2.31
HLA-DMBP28068 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.63□□□□□ -2.31
HLA-DMBP28068 MIR373-201ENST00000362273 69 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 RNU6-1123P-201ENST00000362347 106 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 Y_RNA.18-201ENST00000362461 102 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 Y_RNA.324-201ENST00000365165 102 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 SNORA4.2-201ENST00000365313 147 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 RNU6-533P-201ENST00000384144 107 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 RNU11-5P-201ENST00000391216 129 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 RPS29P13-201ENST00000402041 169 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 Y_RNA.608-201ENST00000410647 95 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 COX6CP10-201ENST00000416832 224 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 AC060773.1-201ENST00000421698 310 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.62□□□□□ -2.31
HLA-DMBP28068 RPS4XP11-201ENST00000446897 772 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 snoU109.3-201ENST00000459477 145 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 AC103851.1-201ENST00000506833 274 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.62□□□□□ -2.31
HLA-DMBP28068 AC104136.1-201ENST00000512969 394 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 RNU6-1223P-201ENST00000517124 104 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
HLA-DMBP28068 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC0.62□□□□□ -2.31
HLA-DMBP28068 AC023050.3-201ENST00000541142 333 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.62□□□□□ -2.31
HLA-DMBP28068 AC021231.3-201ENST00000558497 370 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.62□□□□□ -2.31
HLA-DMBP28068 MIR4709-201ENST00000577272 72 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 MIR4742-201ENST00000581069 85 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 MTATP6P3-201ENST00000581686 676 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 AC078795.3-201ENST00000602913 472 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 AC064872.1-201ENST00000604823 1072 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 RNU4-5P-201ENST00000607255 135 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 AC005520.5-201ENST00000613926 164 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 AL607023.1-201ENST00000620045 248 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 AL450472.1-202ENST00000637286 180 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 AC068647.2-201ENST00000637380 353 ntBASIC0.62□□□□□ -2.31
HLA-DMBP28068 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
HLA-DMBP28068 AL391994.1-201ENST00000254724 282 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 RNU6-179P-201ENST00000363350 107 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 RNU6-660P-201ENST00000364566 109 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 RNU6-45P-201ENST00000384471 107 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
HLA-DMBP28068 RPS26P45-201ENST00000471748 340 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 AC011406.1-201ENST00000512440 370 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC0.61□□□□□ -2.31
HLA-DMBP28068 RNA5SP384-201ENST00000516615 116 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.61□□□□□ -2.31
HLA-DMBP28068 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 AC105148.1-201ENST00000604961 409 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 AC009994.1-201ENST00000606889 253 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 AC126177.8-201ENST00000618339 1015 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 MIR7111-201ENST00000619751 72 ntBASIC0.61□□□□□ -2.31
HLA-DMBP28068 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.61□□□□□ -2.31
HLA-DMBP28068 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.61□□□□□ -2.31
HLA-DMBP28068 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
HLA-DMBP28068 RNU6-37P-201ENST00000362692 107 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 RNU6-11P-201ENST00000364234 107 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 SNORA72.2-201ENST00000365028 127 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 RNU6-25P-201ENST00000383873 107 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 RNU6-48P-201ENST00000384161 107 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 RNU6-378P-201ENST00000384324 107 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 RNU6-16P-201ENST00000384385 107 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 RNU6-15P-201ENST00000384534 107 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 RNU6-29P-201ENST00000384637 107 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 Y_RNA.576-201ENST00000384781 102 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 AC006461.1-201ENST00000412637 326 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC0.6□□□□□ -2.31
HLA-DMBP28068 ELOCP4-201ENST00000420090 333 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.6□□□□□ -2.31
HLA-DMBP28068 SNAP23P1-201ENST00000433229 246 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 RPL39P38-201ENST00000467018 153 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 SNRPGP7-201ENST00000469016 106 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.6□□□□□ -2.31
HLA-DMBP28068 RNU6-351P-201ENST00000516097 100 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 SCARNA16.2-201ENST00000516520 172 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 AC016957.1-201ENST00000534895 309 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 CYP3A137P-201ENST00000562436 69 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 CYP4A27P-201ENST00000567218 190 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 AC008088.1-201ENST00000580993 280 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 AC016727.2-201ENST00000603988 621 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 AL157392.4-201ENST00000609756 345 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 AC138749.5-201ENST00000611461 208 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 AL021879.1-201ENST00000611756 288 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 AC106800.4-201ENST00000614905 153 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 AC116165.2-201ENST00000616705 206 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 MIR338-201ENST00000636369 67 ntBASIC0.6□□□□□ -2.31
HLA-DMBP28068 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.59□□□□□ -2.31
HLA-DMBP28068 RNU6-428P-201ENST00000362942 107 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 Y_RNA.132-201ENST00000363421 102 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 SNORD115-7-201ENST00000365306 82 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 RNA5SP259-201ENST00000365541 109 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 RNU6-877P-201ENST00000383868 107 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 RNU6-1026P-201ENST00000384465 108 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 MIR515-2-201ENST00000384883 83 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 MIR515-1-201ENST00000384884 83 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 MRPL42P2-201ENST00000403169 426 ntBASIC0.59□□□□□ -2.31
HLA-DMBP28068 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.59□□□□□ -2.31
HLA-DMBP28068 AL606490.4-201ENST00000423117 127 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 149 ms