Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC1.11□□□□□ -2.23
COL5A3P25940 EIF4EP4-201ENST00000424916 578 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 TIMM9P3-201ENST00000428659 274 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.11□□□□□ -2.23
COL5A3P25940 MTND1P1-201ENST00000445453 368 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 NDUFB1P2-201ENST00000449477 176 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 AC022364.2-201ENST00000457963 554 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 RPS29P15-201ENST00000458329 171 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 MTCO3P38-201ENST00000468910 766 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 RPS3AP17-201ENST00000472594 777 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.11□□□□□ -2.23
COL5A3P25940 AC107401.1-201ENST00000503426 685 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.11□□□□□ -2.23
COL5A3P25940 AC112206.3-201ENST00000514578 389 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 RNA5SP401-201ENST00000515920 127 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.11□□□□□ -2.23
COL5A3P25940 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.11□□□□□ -2.23
COL5A3P25940 AC092325.1-201ENST00000566449 554 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 AC004223.2-201ENST00000590309 544 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 AC068790.6-201ENST00000602558 258 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 AC017083.3-201ENST00000609955 700 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 AC139792.2-201ENST00000624218 587 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 AL157786.1-207ENST00000627771 695 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.11□□□□□ -2.23
COL5A3P25940 AC100821.1-201ENST00000523153 2479 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 ZNF680P1-201ENST00000436625 1469 ntBASIC1.11□□□□□ -2.23
COL5A3P25940 MTND4P12-201ENST00000498999 1377 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
COL5A3P25940 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.1□□□□□ -2.23
COL5A3P25940 SNORD114-23-201ENST00000363536 72 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RNU4-24P-201ENST00000364565 139 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RNU4-75P-201ENST00000364621 146 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RNU6-996P-201ENST00000365438 107 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RNU6-25P-201ENST00000383873 107 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 SNORA75B-201ENST00000384053 137 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RNU6-48P-201ENST00000384161 107 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RNU6-434P-201ENST00000384376 107 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RNU6-16P-201ENST00000384385 107 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RNU6-15P-201ENST00000384534 107 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RNU6-29P-201ENST00000384637 107 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 Y_RNA.582-201ENST00000391023 95 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 CALM2P3-201ENST00000400429 449 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RNU6-607P-201ENST00000411283 108 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 AL031779.1-201ENST00000415663 330 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 AL353621.1-201ENST00000418219 243 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 AC097463.2-201ENST00000421074 142 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.1□□□□□ -2.23
COL5A3P25940 AC073464.1-201ENST00000429823 534 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RPL23AP6-201ENST00000446637 472 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC1.1□□□□□ -2.23
COL5A3P25940 AL162395.1-201ENST00000457882 422 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 KLF3P2-201ENST00000465138 268 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 AC117503.1-201ENST00000472241 394 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 HMGB1P30-201ENST00000492455 606 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.1□□□□□ -2.23
COL5A3P25940 MTND2P33-201ENST00000506452 1031 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 AC116655.1-201ENST00000508324 901 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 LRRC34P2-201ENST00000514850 553 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 SNORA25.11-201ENST00000515935 105 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 MIR892C-201ENST00000516410 77 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 RNU6-1178P-201ENST00000516674 107 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC1.1□□□□□ -2.23
COL5A3P25940 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC1.1□□□□□ -2.23
COL5A3P25940 AC006199.1-201ENST00000548728 219 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 SUB1P2-201ENST00000556401 297 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.1□□□□□ -2.23
COL5A3P25940 AC068790.2-201ENST00000602601 557 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 AL451064.1-201ENST00000607718 471 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 AC004908.3-201ENST00000610248 625 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.1□□□□□ -2.23
COL5A3P25940 Z75746.1-201ENST00000440243 2080 ntBASIC1.1□□□□□ -2.23
COL5A3P25940 Y_RNA.33-201ENST00000362591 102 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 SNORD3E-201ENST00000362899 217 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 Y_RNA.274-201ENST00000364714 101 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 RNU6-393P-201ENST00000384475 107 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 SNORD116-20-201ENST00000384529 92 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 RNU6-606P-201ENST00000384721 111 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 MIR578-201ENST00000384828 96 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 MIR95-201ENST00000385072 81 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 SNORD70.1-201ENST00000391007 85 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 RNU6-550P-201ENST00000391057 101 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 RNU6-1158P-201ENST00000391167 107 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 RNU2-29P-201ENST00000410423 189 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 EEF1A1P40-201ENST00000412883 573 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 MTCYBP8-201ENST00000422855 651 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC1.09□□□□□ -2.23
COL5A3P25940 C1DP4-201ENST00000455429 424 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 SRRM1P2-201ENST00000464531 1192 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 MTCO3P9-201ENST00000506989 781 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC1.09□□□□□ -2.23
COL5A3P25940 RNU6ATAC13P-201ENST00000516152 131 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 RNU6-506P-201ENST00000516553 94 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 MTND4P7-201ENST00000523876 130 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 AGGF1P4-201ENST00000568249 801 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 MIR3126-201ENST00000577443 74 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 AC004492.1-201ENST00000607036 742 ntBASIC1.09□□□□□ -2.23
COL5A3P25940 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.09□□□□□ -2.23
COL5A3P25940 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms