Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RNU6-1041P-201ENST00000516254 102 ntBASIC-0.65□□□□□ -2.51
HMGA1P17096 RNU1-117P-201ENST00000517041 158 ntBASIC-0.65□□□□□ -2.51
HMGA1P17096 RNU6-1096P-201ENST00000517089 102 ntBASIC-0.65□□□□□ -2.51
HMGA1P17096 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC-0.65□□□□□ -2.51
HMGA1P17096 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.65□□□□□ -2.51
HMGA1P17096 MTCYBP33-201ENST00000575007 1130 ntBASIC-0.65□□□□□ -2.51
HMGA1P17096 MTND1P15-201ENST00000579262 949 ntBASIC-0.65□□□□□ -2.51
HMGA1P17096 MIR4743-201ENST00000584576 69 ntBASIC-0.65□□□□□ -2.51
HMGA1P17096 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC-0.65□□□□□ -2.51
HMGA1P17096 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC-0.66□□□□□ -2.51
HMGA1P17096 MTATP6P27-201ENST00000416987 621 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 AL139396.1-201ENST00000421137 167 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 MTCYBP10-201ENST00000424905 650 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 AC010154.1-201ENST00000425857 269 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 AL121578.1-201ENST00000428051 892 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC-0.66□□□□□ -2.52
HMGA1P17096 USP9YP22-201ENST00000438971 294 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 MED28P2-201ENST00000475771 317 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 RNU1-86P-201ENST00000516108 154 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 RNU7-129P-201ENST00000516128 62 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 RNU6-390P-201ENST00000516259 103 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 RNU1-107P-201ENST00000516617 154 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 RNU2-12P-201ENST00000517216 168 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 AF235103.2-201ENST00000525753 346 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC-0.66□□□□□ -2.52
HMGA1P17096 MIR4300-201ENST00000581016 96 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 7SK.7-201ENST00000603504 247 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 MTND3P19-201ENST00000603825 345 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 AC096720.1-201ENST00000604441 183 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 AC108676.2-201ENST00000605225 163 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 AL591926.4-201ENST00000616895 298 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 AC015726.2-201ENST00000620112 122 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 MIR3529-201ENST00000637713 78 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 MTND5P32-201ENST00000560711 1802 ntBASIC-0.66□□□□□ -2.52
HMGA1P17096 SNORA9.1-201ENST00000362412 131 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 SNORD114-12-201ENST00000365400 75 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 Y_RNA.471-201ENST00000384312 102 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 RNU6-1300P-201ENST00000391046 108 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 AL592310.1-201ENST00000414330 671 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 MTCO1P21-201ENST00000416634 589 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC-0.67□□□□□ -2.52
HMGA1P17096 LARP1BP3-201ENST00000437229 869 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 AC245047.8-201ENST00000456455 284 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 AC104629.1-201ENST00000494226 508 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 RBBP4P6-201ENST00000508098 202 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 AC025465.4-201ENST00000513422 638 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 MTND4LP26-201ENST00000518144 282 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC-0.67□□□□□ -2.52
HMGA1P17096 TPRKBP2-201ENST00000565969 475 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 AC025449.1-201ENST00000603896 529 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 MIR338-201ENST00000636369 67 ntBASIC-0.67□□□□□ -2.52
HMGA1P17096 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.67□□□□□ -2.52
HMGA1P17096 SNORD95.1-201ENST00000364099 68 ntBASIC-0.68□□□□□ -2.52
HMGA1P17096 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.68□□□□□ -2.52
HMGA1P17096 PCNPP3-201ENST00000393579 471 ntBASIC-0.68□□□□□ -2.52
HMGA1P17096 MIR938-201ENST00000401216 83 ntBASIC-0.68□□□□□ -2.52
HMGA1P17096 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC-0.68□□□□□ -2.52
HMGA1P17096 snoU13.14-201ENST00000459372 104 ntBASIC-0.68□□□□□ -2.52
HMGA1P17096 HAR1A.1-201ENST00000459583 118 ntBASIC-0.68□□□□□ -2.52
HMGA1P17096 SRRM1P2-201ENST00000464531 1192 ntBASIC-0.68□□□□□ -2.52
HMGA1P17096 AC074133.1-201ENST00000515696 183 ntBASIC-0.68□□□□□ -2.52
HMGA1P17096 SNORA18.1-201ENST00000363418 128 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 RNU6-487P-201ENST00000365430 104 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC-0.69□□□□□ -2.52
HMGA1P17096 MIR573-201ENST00000384964 99 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 MIR525-201ENST00000384978 85 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 RNA5SP323-201ENST00000391094 133 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 SNORA12-201ENST00000391162 147 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 MTCO3P41-201ENST00000414801 328 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 ISCA1P1-201ENST00000426679 387 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 MTCO1P19-201ENST00000443487 500 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 MTATP6P30-201ENST00000443540 664 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC-0.69□□□□□ -2.52
HMGA1P17096 AC025678.1-201ENST00000567861 338 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 AC234772.3-201ENST00000602277 528 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 AL390208.1-201ENST00000605885 644 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 AC087588.2-201ENST00000617667 426 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 AC006001.4-201ENST00000622243 395 ntBASIC-0.69□□□□□ -2.52
HMGA1P17096 RNU6-637P-201ENST00000384050 107 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC-0.7□□□□□ -2.52
HMGA1P17096 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC-0.7□□□□□ -2.52
HMGA1P17096 RNU6-735P-201ENST00000410612 107 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 RNU4-63P-201ENST00000411313 118 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.7□□□□□ -2.52
HMGA1P17096 RPS29P15-201ENST00000458329 171 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 LAMTOR3P2-201ENST00000504479 232 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 AC074198.2-201ENST00000508153 258 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 RNU6-572P-201ENST00000516724 80 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 RNA5SP268-201ENST00000516828 124 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 SCARNA1-201ENST00000517138 166 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 MIR4778-201ENST00000577635 80 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 MIR4742-201ENST00000581069 85 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 AL670379.3-201ENST00000605040 251 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 AL158032.1-201ENST00000605401 106 ntBASIC-0.7□□□□□ -2.52
HMGA1P17096 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC-0.7□□□□□ -2.52
HMGA1P17096 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC-0.7□□□□□ -2.52
HMGA1P17096 RNU6-534P-201ENST00000364877 106 ntBASIC-0.71□□□□□ -2.52
HMGA1P17096 RNU6-284P-201ENST00000411105 106 ntBASIC-0.71□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms