Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2□□□□□ -2.09
VIMP08670 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
VIMP08670 RNU6-933P-201ENST00000384424 107 ntBASIC1.99□□□□□ -2.09
VIMP08670 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
VIMP08670 RNU6-1093P-201ENST00000391194 107 ntBASIC1.99□□□□□ -2.09
VIMP08670 SNORA11.4-201ENST00000408823 129 ntBASIC1.99□□□□□ -2.09
VIMP08670 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.99□□□□□ -2.09
VIMP08670 RPL31P63-201ENST00000422565 375 ntBASIC1.99□□□□□ -2.09
VIMP08670 MTCO3P18-201ENST00000440206 761 ntBASIC1.99□□□□□ -2.09
VIMP08670 FTH1P25-201ENST00000447665 469 ntBASIC1.99□□□□□ -2.09
VIMP08670 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.99□□□□□ -2.09
VIMP08670 AC108938.1-201ENST00000451204 136 ntBASIC1.99□□□□□ -2.09
VIMP08670 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.99□□□□□ -2.09
VIMP08670 MTND1P5-201ENST00000517906 940 ntBASIC1.99□□□□□ -2.09
VIMP08670 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC1.99□□□□□ -2.09
VIMP08670 AC090517.1-201ENST00000569307 266 ntBASIC1.99□□□□□ -2.09
VIMP08670 MIR3976-201ENST00000606807 139 ntBASIC1.99□□□□□ -2.09
VIMP08670 AL022345.1-201ENST00000607292 135 ntBASIC1.99□□□□□ -2.09
VIMP08670 MIR8076-201ENST00000611401 83 ntBASIC1.99□□□□□ -2.09
VIMP08670 AC090617.10-201ENST00000624308 134 ntBASIC1.99□□□□□ -2.09
VIMP08670 RNU5B-2P-201ENST00000363036 113 ntBASIC1.98□□□□□ -2.09
VIMP08670 RNU6-534P-201ENST00000364877 106 ntBASIC1.98□□□□□ -2.09
VIMP08670 Y_RNA.332-201ENST00000365271 113 ntBASIC1.98□□□□□ -2.09
VIMP08670 RNU6-877P-201ENST00000383868 107 ntBASIC1.98□□□□□ -2.09
VIMP08670 RNU6-1286P-201ENST00000383871 107 ntBASIC1.98□□□□□ -2.09
VIMP08670 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
VIMP08670 SNORD115-47-201ENST00000391226 86 ntBASIC1.98□□□□□ -2.09
VIMP08670 MIR548F1-201ENST00000408667 84 ntBASIC1.98□□□□□ -2.09
VIMP08670 RNU6-373P-201ENST00000411247 98 ntBASIC1.98□□□□□ -2.09
VIMP08670 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.98□□□□□ -2.09
VIMP08670 AL590632.1-201ENST00000424289 371 ntBASIC1.98□□□□□ -2.09
VIMP08670 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC1.98□□□□□ -2.09
VIMP08670 AL353689.1-201ENST00000438895 199 ntBASIC1.98□□□□□ -2.09
VIMP08670 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
VIMP08670 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.98□□□□□ -2.09
VIMP08670 TRBVA-201ENST00000498804 316 ntBASIC1.98□□□□□ -2.09
VIMP08670 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.98□□□□□ -2.09
VIMP08670 RNU5F-4P-201ENST00000516581 114 ntBASIC1.98□□□□□ -2.09
VIMP08670 RNU6-1098P-201ENST00000516772 96 ntBASIC1.98□□□□□ -2.09
VIMP08670 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
VIMP08670 MIR4299-201ENST00000577899 72 ntBASIC1.98□□□□□ -2.09
VIMP08670 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.98□□□□□ -2.09
VIMP08670 AL133215.3-201ENST00000609801 448 ntBASIC1.98□□□□□ -2.09
VIMP08670 AL138726.1-201ENST00000614873 333 ntBASIC1.98□□□□□ -2.09
VIMP08670 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.98□□□□□ -2.09
VIMP08670 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.98□□□□□ -2.09
VIMP08670 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
VIMP08670 Y_RNA.100-201ENST00000363141 102 ntBASIC1.97□□□□□ -2.09
VIMP08670 Y_RNA.151-201ENST00000363566 112 ntBASIC1.97□□□□□ -2.09
VIMP08670 SNORD114-6-201ENST00000364393 72 ntBASIC1.97□□□□□ -2.09
VIMP08670 Y_RNA.295-201ENST00000364918 102 ntBASIC1.97□□□□□ -2.09
VIMP08670 Y_RNA.414-201ENST00000384011 101 ntBASIC1.97□□□□□ -2.09
VIMP08670 RNU6-968P-201ENST00000384076 107 ntBASIC1.97□□□□□ -2.09
VIMP08670 Y_RNA.453-201ENST00000384223 109 ntBASIC1.97□□□□□ -2.09
VIMP08670 RNU6-160P-201ENST00000384591 107 ntBASIC1.97□□□□□ -2.09
VIMP08670 RNA5SP494-201ENST00000410653 129 ntBASIC1.97□□□□□ -2.09
VIMP08670 AC009963.1-201ENST00000417265 157 ntBASIC1.97□□□□□ -2.09
VIMP08670 ZNF885P-201ENST00000420174 1098 ntBASIC1.97□□□□□ -2.09
VIMP08670 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC1.97□□□□□ -2.09
VIMP08670 AL645568.3-201ENST00000433683 316 ntBASIC1.97□□□□□ -2.09
VIMP08670 MTND2P29-201ENST00000438595 412 ntBASIC1.97□□□□□ -2.09
VIMP08670 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC1.97□□□□□ -2.09
VIMP08670 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.97□□□□□ -2.09
VIMP08670 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC1.97□□□□□ -2.09
VIMP08670 MTCYBP18-201ENST00000501056 747 ntBASIC1.97□□□□□ -2.09
VIMP08670 RNU6-256P-201ENST00000516747 97 ntBASIC1.97□□□□□ -2.09
VIMP08670 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.97□□□□□ -2.09
VIMP08670 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.97□□□□□ -2.09
VIMP08670 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.97□□□□□ -2.09
VIMP08670 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.97□□□□□ -2.09
VIMP08670 AC026464.5-201ENST00000562497 722 ntBASIC1.97□□□□□ -2.09
VIMP08670 AC074050.1-201ENST00000563247 211 ntBASIC1.97□□□□□ -2.09
VIMP08670 FGF7P1-201ENST00000582820 288 ntBASIC1.97□□□□□ -2.09
VIMP08670 MIR3672-201ENST00000584290 82 ntBASIC1.97□□□□□ -2.09
VIMP08670 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
VIMP08670 AL590240.4-201ENST00000616908 390 ntBASIC1.97□□□□□ -2.09
VIMP08670 AC130454.1-201ENST00000622948 401 ntBASIC1.97□□□□□ -2.09
VIMP08670 MIR3688-2-201ENST00000636963 87 ntBASIC1.97□□□□□ -2.09
VIMP08670 RNU6-23P-201ENST00000363283 107 ntBASIC1.96□□□□□ -2.1
VIMP08670 RNA5SP493-201ENST00000364115 91 ntBASIC1.96□□□□□ -2.1
VIMP08670 RNU6-95P-201ENST00000384697 107 ntBASIC1.96□□□□□ -2.1
VIMP08670 Y_RNA.573-201ENST00000384763 105 ntBASIC1.96□□□□□ -2.1
VIMP08670 AL158823.1-201ENST00000418441 478 ntBASIC1.96□□□□□ -2.1
VIMP08670 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.96□□□□□ -2.1
VIMP08670 MTND1P34-201ENST00000438556 671 ntBASIC1.96□□□□□ -2.1
VIMP08670 SNRPEP8-201ENST00000442866 260 ntBASIC1.96□□□□□ -2.1
VIMP08670 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.96□□□□□ -2.1
VIMP08670 MTND1P11-201ENST00000456661 876 ntBASIC1.96□□□□□ -2.1
VIMP08670 RNU7-14P-201ENST00000459331 62 ntBASIC1.96□□□□□ -2.1
VIMP08670 TOMM22P6-201ENST00000465035 409 ntBASIC1.96□□□□□ -2.1
VIMP08670 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.96□□□□□ -2.1
VIMP08670 AC010486.1-201ENST00000511793 424 ntBASIC1.96□□□□□ -2.1
VIMP08670 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.96□□□□□ -2.1
VIMP08670 AC243960.4-201ENST00000600532 288 ntBASIC1.96□□□□□ -2.1
VIMP08670 AC090517.2-201ENST00000614966 680 ntBASIC1.96□□□□□ -2.1
VIMP08670 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.96□□□□□ -2.1
VIMP08670 AC139792.2-201ENST00000624218 587 ntBASIC1.96□□□□□ -2.1
VIMP08670 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.96□□□□□ -2.1
VIMP08670 LINC02555-201ENST00000563933 1951 ntBASIC1.96□□□□□ -2.1
VIMP08670 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms