Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.97□□□□□ -1.93
HOXA3O43365 RNU6-966P-201ENST00000516479 104 ntBASIC2.97□□□□□ -1.93
HOXA3O43365 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC2.97□□□□□ -1.93
HOXA3O43365 MIR4474-201ENST00000579189 78 ntBASIC2.97□□□□□ -1.93
HOXA3O43365 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.97□□□□□ -1.93
HOXA3O43365 AC091953.5-201ENST00000622919 233 ntBASIC2.97□□□□□ -1.93
HOXA3O43365 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
HOXA3O43365 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC2.97□□□□□ -1.93
HOXA3O43365 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA3O43365 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA3O43365 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA3O43365 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
HOXA3O43365 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC2.96□□□□□ -1.93
HOXA3O43365 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC2.96□□□□□ -1.93
HOXA3O43365 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA3O43365 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA3O43365 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXA3O43365 RNU1-105P-201ENST00000363470 161 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 Y_RNA.150-201ENST00000363562 102 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 RNA5SP50-201ENST00000363731 107 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 Y_RNA.270-201ENST00000364693 104 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 Y_RNA.275-201ENST00000364726 110 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 Y_RNA.292-201ENST00000364904 97 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 RNU6-1310P-201ENST00000384153 107 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 MIR491-201ENST00000384877 84 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 MIR483-201ENST00000385070 76 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 RNA5SP475-201ENST00000410568 110 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.96□□□□□ -1.94
HOXA3O43365 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA3O43365 HMGN2P20-201ENST00000437531 273 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 AC004386.2-201ENST00000441858 148 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 Y_RNA.679-201ENST00000516416 91 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 RN7SKP40-201ENST00000517211 242 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA3O43365 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA3O43365 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA3O43365 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA3O43365 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.96□□□□□ -1.94
HOXA3O43365 AC091932.3-201ENST00000624223 323 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 TNPO1P3-201ENST00000436471 2662 ntBASIC2.96□□□□□ -1.94
HOXA3O43365 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA3O43365 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA3O43365 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.96□□□□□ -1.94
HOXA3O43365 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
HOXA3O43365 ANKRD30BP1-201ENST00000451052 2186 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 GABRG2-229ENST00000641017 3628 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
HOXA3O43365 UBE2WP1-201ENST00000362030 340 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 snoU2_19.1-201ENST00000362361 80 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 SNORA14A-201ENST00000364773 135 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 SNORD6-201ENST00000365444 73 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 RNVU1-14-201ENST00000384770 164 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 MIR767-201ENST00000390228 109 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 RNA5SP354-201ENST00000391247 136 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 Y_RNA.590-201ENST00000410140 107 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 RNU2-61P-201ENST00000411069 191 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 RNU6-1199P-201ENST00000411249 104 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 Y_RNA.626-201ENST00000411288 95 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 AC004866.1-201ENST00000411748 78 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 Z98742.2-201ENST00000431564 187 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXA3O43365 NDUFB4P10-201ENST00000452541 359 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 AC006445.1-201ENST00000491925 405 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 RPS27P26-201ENST00000494583 239 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXA3O43365 SNORD116-28-201ENST00000516123 91 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXA3O43365 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.95□□□□□ -1.94
HOXA3O43365 CBX3P4-201ENST00000538909 354 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 AC090877.1-201ENST00000561418 344 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 AC026470.2-201ENST00000561492 181 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC2.95□□□□□ -1.94
HOXA3O43365 AL512605.2-201ENST00000592972 256 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.95□□□□□ -1.94
HOXA3O43365 AL137849.1-201ENST00000604767 169 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 TCL6_2.1-201ENST00000615162 119 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 AC005562.2-201ENST00000618264 111 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 MIR7975-201ENST00000619350 68 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 MIR3674-201ENST00000636576 68 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 IPO8P1-201ENST00000455509 3109 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 AC073346.2-201ENST00000624724 2058 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC2.95□□□□□ -1.94
HOXA3O43365 AC092593.1-201ENST00000515413 1815 ntBASIC2.95□□□□□ -1.94
HOXA3O43365 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HOXA3O43365 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA3O43365 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
HOXA3O43365 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.94□□□□□ -1.94
HOXA3O43365 AC069528.2-201ENST00000624849 1991 ntBASIC2.94□□□□□ -1.94
HOXA3O43365 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC2.94□□□□□ -1.94
HOXA3O43365 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HOXA3O43365 MIR411-201ENST00000362239 96 ntBASIC2.94□□□□□ -1.94
HOXA3O43365 SNORD9-201ENST00000362566 104 ntBASIC2.94□□□□□ -1.94
HOXA3O43365 Y_RNA.180-201ENST00000363867 113 ntBASIC2.94□□□□□ -1.94
HOXA3O43365 SNORA18.2-201ENST00000383865 132 ntBASIC2.94□□□□□ -1.94
HOXA3O43365 Y_RNA.415-201ENST00000384012 112 ntBASIC2.94□□□□□ -1.94
HOXA3O43365 RNU6-1289P-201ENST00000384431 106 ntBASIC2.94□□□□□ -1.94
HOXA3O43365 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
HOXA3O43365 SNORA46.1-201ENST00000391069 153 ntBASIC2.94□□□□□ -1.94
HOXA3O43365 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.94□□□□□ -1.94
HOXA3O43365 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.94□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms