Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC132942.1-201ENST00000486753 483 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 AC021146.2-201ENST00000504736 556 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 AC108729.3-201ENST00000513484 108 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 AC016256.1-201ENST00000547971 354 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 AC026371.1-201ENST00000551867 419 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 AC109446.1-201ENST00000566172 220 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 CPDP1-201ENST00000579660 283 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.6□□□□□ -1.99
NPHP1O15259 AC005520.5-201ENST00000613926 164 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 AC068137.4-201ENST00000638485 296 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
NPHP1O15259 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.6□□□□□ -1.99
NPHP1O15259 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.59□□□□□ -1.99
NPHP1O15259 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.59□□□□□ -1.99
NPHP1O15259 Y_RNA.89-201ENST00000363031 102 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 Y_RNA.99-201ENST00000363138 105 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 U3.9-201ENST00000363823 204 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 RNU6-234P-201ENST00000365229 104 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 RNU4-12P-201ENST00000365233 139 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 RNU6-128P-201ENST00000383976 107 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 RNU6-26P-201ENST00000383985 107 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 Y_RNA.530-201ENST00000384587 101 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 RNA5SP213-201ENST00000391031 106 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 MIR1283-2-201ENST00000408621 87 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 RNA5SP247-201ENST00000411181 105 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.59□□□□□ -1.99
NPHP1O15259 EIF1AXP1-201ENST00000419267 435 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 USP9YP28-201ENST00000435142 589 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.59□□□□□ -1.99
NPHP1O15259 MTCO1P29-201ENST00000496868 288 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 AC114801.2-201ENST00000503825 781 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 FAM206BP-201ENST00000510179 541 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 AP000942.3-201ENST00000603702 160 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.59□□□□□ -1.99
NPHP1O15259 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
NPHP1O15259 RNU6-1252P-201ENST00000363054 104 ntBASIC2.58□□□□□ -2
NPHP1O15259 RNU6-1164P-201ENST00000364428 107 ntBASIC2.58□□□□□ -2
NPHP1O15259 MIR17-201ENST00000385012 84 ntBASIC2.58□□□□□ -2
NPHP1O15259 AL357139.1-201ENST00000407792 426 ntBASIC2.58□□□□□ -2
NPHP1O15259 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.58□□□□□ -2
NPHP1O15259 RPL23AP36-201ENST00000413895 458 ntBASIC2.58□□□□□ -2
NPHP1O15259 VN1R36P-201ENST00000414936 291 ntBASIC2.58□□□□□ -2
NPHP1O15259 AC012306.1-201ENST00000423267 114 ntBASIC2.58□□□□□ -2
NPHP1O15259 BX510359.4-201ENST00000423750 193 ntBASIC2.58□□□□□ -2
NPHP1O15259 AC096920.1-201ENST00000423991 241 ntBASIC2.58□□□□□ -2
NPHP1O15259 MTND1P34-201ENST00000438556 671 ntBASIC2.58□□□□□ -2
NPHP1O15259 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC2.58□□□□□ -2
NPHP1O15259 AC007547.1-201ENST00000462177 490 ntBASIC2.58□□□□□ -2
NPHP1O15259 RPL23AP63-201ENST00000498752 471 ntBASIC2.58□□□□□ -2
NPHP1O15259 TRBVA-201ENST00000498804 316 ntBASIC2.58□□□□□ -2
NPHP1O15259 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.58□□□□□ -2
NPHP1O15259 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.58□□□□□ -2
NPHP1O15259 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.58□□□□□ -2
NPHP1O15259 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.58□□□□□ -2
NPHP1O15259 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.58□□□□□ -2
NPHP1O15259 EIF4A1P12-201ENST00000551910 141 ntBASIC2.58□□□□□ -2
NPHP1O15259 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.58□□□□□ -2
NPHP1O15259 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC2.58□□□□□ -2
NPHP1O15259 AC009994.1-201ENST00000606889 253 ntBASIC2.58□□□□□ -2
NPHP1O15259 AL136221.1-201ENST00000621449 509 ntBASIC2.58□□□□□ -2
NPHP1O15259 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.58□□□□□ -2
NPHP1O15259 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.57□□□□□ -2
NPHP1O15259 MIRLET7G-201ENST00000362280 84 ntBASIC2.57□□□□□ -2
NPHP1O15259 RNU6-534P-201ENST00000364877 106 ntBASIC2.57□□□□□ -2
NPHP1O15259 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.57□□□□□ -2
NPHP1O15259 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.57□□□□□ -2
NPHP1O15259 RNU6-373P-201ENST00000411247 98 ntBASIC2.57□□□□□ -2
NPHP1O15259 AL356379.1-201ENST00000414105 126 ntBASIC2.57□□□□□ -2
NPHP1O15259 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.57□□□□□ -2
NPHP1O15259 MTCO3P18-201ENST00000440206 761 ntBASIC2.57□□□□□ -2
NPHP1O15259 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.57□□□□□ -2
NPHP1O15259 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.57□□□□□ -2
NPHP1O15259 AP000889.2-201ENST00000532684 490 ntBASIC2.57□□□□□ -2
NPHP1O15259 AC023043.2-201ENST00000589678 1026 ntBASIC2.57□□□□□ -2
NPHP1O15259 MIR6840-201ENST00000611937 71 ntBASIC2.57□□□□□ -2
NPHP1O15259 AC090517.2-201ENST00000614966 680 ntBASIC2.57□□□□□ -2
NPHP1O15259 AC139792.2-201ENST00000624218 587 ntBASIC2.57□□□□□ -2
NPHP1O15259 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.57□□□□□ -2
NPHP1O15259 AC009487.4-201ENST00000624969 3585 ntBASIC2.56□□□□□ -2
NPHP1O15259 Y_RNA.100-201ENST00000363141 102 ntBASIC2.56□□□□□ -2
NPHP1O15259 MIR208B-201ENST00000401172 77 ntBASIC2.56□□□□□ -2
NPHP1O15259 Y_RNA.595-201ENST00000410403 105 ntBASIC2.56□□□□□ -2
NPHP1O15259 CYCSP49-201ENST00000420810 319 ntBASIC2.56□□□□□ -2
NPHP1O15259 RN7SKP210-201ENST00000459176 261 ntBASIC2.56□□□□□ -2
NPHP1O15259 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.56□□□□□ -2
NPHP1O15259 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.56□□□□□ -2
NPHP1O15259 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.56□□□□□ -2
NPHP1O15259 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.56□□□□□ -2
NPHP1O15259 MIR3688-2-201ENST00000636963 87 ntBASIC2.56□□□□□ -2
NPHP1O15259 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
NPHP1O15259 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
NPHP1O15259 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.55□□□□□ -2
NPHP1O15259 Y_RNA.123-201ENST00000363338 102 ntBASIC2.55□□□□□ -2
NPHP1O15259 SNORA29-201ENST00000384183 140 ntBASIC2.55□□□□□ -2
NPHP1O15259 U3.40-201ENST00000408706 208 ntBASIC2.55□□□□□ -2
NPHP1O15259 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.55□□□□□ -2
NPHP1O15259 AL645568.3-201ENST00000433683 316 ntBASIC2.55□□□□□ -2
NPHP1O15259 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.55□□□□□ -2
NPHP1O15259 HMGN2P18-201ENST00000450680 270 ntBASIC2.55□□□□□ -2
NPHP1O15259 RNU7-187P-201ENST00000458985 68 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms