Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
CCDC9Q9Y3X0 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CCDC9Q9Y3X0 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 Y_RNA.187-201ENST00000363918 113 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 MIR561-201ENST00000385216 97 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 MTCYBP10-201ENST00000424905 650 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 CBX3P6-201ENST00000430257 527 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 AC087499.2-201ENST00000432861 149 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 CST9LP2-201ENST00000437612 320 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 RNU7-152P-201ENST00000458982 64 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 AC022493.2-201ENST00000506122 481 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 Y_RNA.706-201ENST00000516933 99 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 AC104581.2-201ENST00000572227 430 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 AC010928.2-201ENST00000588017 287 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 AC100812.1-201ENST00000607622 580 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 AC090574.1-201ENST00000623186 233 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 AC091903.1-201ENST00000624322 454 ntBASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 HDX-206ENST00000506585 6158 ntTSL 2 BASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CCDC9Q9Y3X0 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 RNU6-944P-201ENST00000364023 107 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 Y_RNA.460-201ENST00000384255 102 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 Y_RNA.535-201ENST00000384612 99 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 SNORA12.2-201ENST00000391040 156 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 SNORA12-201ENST00000391162 147 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 MIR887-201ENST00000401258 79 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 RNU2-52P-201ENST00000410680 190 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 AC007098.1-201ENST00000420122 367 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 MTCO3P29-201ENST00000432119 779 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 AC112220.1-201ENST00000434628 355 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 MIR2276-201ENST00000516886 89 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 AL133255.1-201ENST00000606374 441 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 U4atac.1-201ENST00000618345 95 ntBASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
CCDC9Q9Y3X0 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 Y_RNA.405-201ENST00000383979 100 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 RNU6-546P-201ENST00000383991 107 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 Y_RNA.451-201ENST00000384200 100 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 Y_RNA.524-201ENST00000384564 100 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 Y_RNA.561-201ENST00000384694 100 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 RNU6-541P-201ENST00000384709 110 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 MIR1294-201ENST00000408503 142 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 RNU6-470P-201ENST00000515954 104 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 RNU6-1170P-201ENST00000515974 106 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 AC080078.3-201ENST00000605407 463 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 AC007742.2-201ENST00000618226 398 ntBASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 FTX-214ENST00000638437 12267 ntTSL 5 BASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
CCDC9Q9Y3X0 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 MIR30E-201ENST00000362104 92 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 RNU6-1040P-201ENST00000383974 107 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 MIR504-201ENST00000385065 83 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 RNU2-32P-201ENST00000411193 191 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 SNORD109B-201ENST00000458961 67 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 SNORD109A-201ENST00000459128 67 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 TOMM22P6-201ENST00000465035 409 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 RNU6-1198P-201ENST00000516904 67 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 AC018630.3-201ENST00000542637 96 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 AC004584.2-201ENST00000570407 410 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 MIR5701-3-201ENST00000578890 82 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 MIR5701-1-201ENST00000585138 82 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 TEX41-243ENST00000614173 190 ntTSL 5 BASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 MIR5701-2-201ENST00000615634 82 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 Z82209.1-201ENST00000422141 2135 ntBASIC4.04□□□□□ -1.76
CCDC9Q9Y3X0 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 RNU1-23P-201ENST00000363361 144 ntBASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 AF228730.4-201ENST00000421457 183 ntBASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 CENPBD1P1-201ENST00000464061 469 ntBASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 RNA5SP385-201ENST00000515947 110 ntBASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 RNU1-41P-201ENST00000516161 162 ntBASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 RNU1-48P-201ENST00000516400 162 ntBASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 AC090517.1-201ENST00000569307 266 ntBASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 CYP2C61P-201ENST00000604072 290 ntBASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 AL050343.2-201ENST00000607338 280 ntBASIC4.03□□□□□ -1.76
CCDC9Q9Y3X0 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 SNORD32B-201ENST00000364460 84 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 Y_RNA.813-201ENST00000364639 102 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 RNU6-1072P-201ENST00000384703 107 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 RNU6-443P-201ENST00000384780 107 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 Y_RNA.579-201ENST00000390939 94 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 MIR320B2-201ENST00000408479 138 ntBASIC4.02□□□□□ -1.77
CCDC9Q9Y3X0 AC092423.1-201ENST00000430165 186 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 421.2 ms