Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNU4-9P-201ENST00000364951 139 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 RNU6-968P-201ENST00000384076 107 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.83□□□□□ -1.96
VPS4AQ9UN37 RNA5SP354-201ENST00000391247 136 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 MRPL42P3-201ENST00000401492 326 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 RNA5SP494-201ENST00000410653 129 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AL358075.3-201ENST00000426289 226 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 CHEK2P4-201ENST00000450340 246 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AP001324.2-201ENST00000461163 319 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 RPS27AP9-201ENST00000477681 438 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 TRBV12-1-201ENST00000479785 344 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AF186996.7-201ENST00000492781 209 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS4AQ9UN37 RNU6-1137P-201ENST00000517073 99 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AC115990.1-201ENST00000526957 301 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 GNAI2P1-201ENST00000541815 315 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 HSPE1P4-201ENST00000550617 308 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AC004584.2-201ENST00000570407 410 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AC006504.6-201ENST00000590142 199 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AC010620.2-201ENST00000600135 313 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AC092447.9-201ENST00000603395 144 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AL355877.2-201ENST00000603670 358 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 AL360085.1-201ENST00000604713 532 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 SNORD58B-201ENST00000607313 66 ntBASIC2.83□□□□□ -1.96
VPS4AQ9UN37 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.83□□□□□ -1.96
VPS4AQ9UN37 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.82□□□□□ -1.96
VPS4AQ9UN37 RNU6-874P-201ENST00000362390 105 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 Y_RNA.40-201ENST00000362645 93 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 RNU6-529P-201ENST00000363383 104 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 RNU6-142P-201ENST00000384019 107 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 MIR147B-201ENST00000390185 80 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 Y_RNA.645-201ENST00000391229 102 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 RN7SKP220-201ENST00000410611 288 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 RNA5SP492-201ENST00000411330 114 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 AIMP1P2-201ENST00000425294 312 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 Z82188.1-201ENST00000436709 154 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 AC012308.1-201ENST00000451232 178 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 RPL30P12-201ENST00000474666 353 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 AC105758.1-201ENST00000506038 399 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 RNU6-826P-201ENST00000516827 104 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 SCARNA11.3-201ENST00000517276 130 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 HSPE1P20-201ENST00000538133 289 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
VPS4AQ9UN37 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS4AQ9UN37 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS4AQ9UN37 MIR4319-201ENST00000577285 85 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS4AQ9UN37 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.82□□□□□ -1.96
VPS4AQ9UN37 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
VPS4AQ9UN37 AC006157.1-201ENST00000611750 366 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.82□□□□□ -1.96
VPS4AQ9UN37 AL606534.2-204ENST00000635008 178 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 MIR4272-201ENST00000635924 64 ntBASIC2.82□□□□□ -1.96
VPS4AQ9UN37 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
VPS4AQ9UN37 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS4AQ9UN37 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
VPS4AQ9UN37 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS4AQ9UN37 RNU4-42P-201ENST00000364738 142 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 RNU6-639P-201ENST00000384074 107 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 RNU6-17P-201ENST00000384245 107 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 RNU6-18P-201ENST00000384527 107 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 MIR181B1-201ENST00000385240 110 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 RNU6-700P-201ENST00000391043 107 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 AL133475.1-201ENST00000404414 305 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS4AQ9UN37 MTND2P23-201ENST00000422990 651 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS4AQ9UN37 Z96811.1-201ENST00000445880 108 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.81□□□□□ -1.96
VPS4AQ9UN37 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.81□□□□□ -1.96
VPS4AQ9UN37 AC112492.4-201ENST00000456549 352 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS4AQ9UN37 snoU13.30-201ENST00000458951 104 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 Y_RNA.661-201ENST00000516003 99 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 RNU7-4P-201ENST00000516961 62 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 AC021231.3-201ENST00000558497 370 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 MIR4680-201ENST00000580906 66 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 AC023043.3-201ENST00000593113 385 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 AC008739.2-201ENST00000597006 317 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 AL078605.1-201ENST00000603529 500 ntBASIC2.81□□□□□ -1.96
VPS4AQ9UN37 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS4AQ9UN37 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.81□□□□□ -1.96
VPS4AQ9UN37 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS4AQ9UN37 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
VPS4AQ9UN37 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.8□□□□□ -1.96
VPS4AQ9UN37 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.8□□□□□ -1.96
VPS4AQ9UN37 SNORD114-19-201ENST00000363072 75 ntBASIC2.8□□□□□ -1.96
VPS4AQ9UN37 VTRNA1-1-201ENST00000363120 99 ntBASIC2.8□□□□□ -1.96
VPS4AQ9UN37 Y_RNA.145-201ENST00000363527 102 ntBASIC2.8□□□□□ -1.96
VPS4AQ9UN37 Y_RNA.364-201ENST00000365532 101 ntBASIC2.8□□□□□ -1.96
VPS4AQ9UN37 SNORD21-201ENST00000383953 95 ntBASIC2.8□□□□□ -1.96
VPS4AQ9UN37 Y_RNA.405-201ENST00000383979 100 ntBASIC2.8□□□□□ -1.96
VPS4AQ9UN37 Y_RNA.451-201ENST00000384200 100 ntBASIC2.8□□□□□ -1.96
VPS4AQ9UN37 SNORA54-201ENST00000384281 123 ntBASIC2.8□□□□□ -1.96
VPS4AQ9UN37 Y_RNA.524-201ENST00000384564 100 ntBASIC2.8□□□□□ -1.96
VPS4AQ9UN37 Y_RNA.561-201ENST00000384694 100 ntBASIC2.8□□□□□ -1.96
VPS4AQ9UN37 MIR190B-201ENST00000401119 79 ntBASIC2.8□□□□□ -1.96
VPS4AQ9UN37 SNORD88.1-201ENST00000408684 91 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms