Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SNORA25B-201ENST00000365507 128 ntBASIC3.65□□□□□ -1.83
SHROOM4Q9ULL8 SNORA51.11-201ENST00000384442 131 ntBASIC3.65□□□□□ -1.83
SHROOM4Q9ULL8 Y_RNA.516-201ENST00000384541 124 ntBASIC3.65□□□□□ -1.83
SHROOM4Q9ULL8 RNU6-332P-201ENST00000391193 108 ntBASIC3.65□□□□□ -1.83
SHROOM4Q9ULL8 SNAP23P1-201ENST00000433229 246 ntBASIC3.65□□□□□ -1.83
SHROOM4Q9ULL8 AL359672.1-201ENST00000442302 409 ntBASIC3.65□□□□□ -1.83
SHROOM4Q9ULL8 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.65□□□□□ -1.83
SHROOM4Q9ULL8 AC083904.1-201ENST00000487828 231 ntBASIC3.65□□□□□ -1.83
SHROOM4Q9ULL8 RNU6-250P-201ENST00000516958 103 ntBASIC3.65□□□□□ -1.83
SHROOM4Q9ULL8 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.65□□□□□ -1.83
SHROOM4Q9ULL8 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.65□□□□□ -1.83
SHROOM4Q9ULL8 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 RNU6-1329P-201ENST00000365664 107 ntBASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 RNU1-148P-201ENST00000384472 162 ntBASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 AL445685.2-201ENST00000422551 342 ntBASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 AL031659.1-201ENST00000447075 539 ntBASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 RPL9P9-202ENST00000466501 579 ntBASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 HMGB1P35-201ENST00000503360 598 ntBASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 AC016632.1-201ENST00000503994 196 ntBASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 AP000763.2-201ENST00000540641 163 ntBASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 AP001836.1-201ENST00000604675 523 ntBASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 AC018889.1-201ENST00000605372 397 ntBASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 AC084768.2-201ENST00000622736 221 ntBASIC3.64□□□□□ -1.83
SHROOM4Q9ULL8 ZNF271P-202ENST00000465539 1970 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 RNU6-1090P-201ENST00000364065 94 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 RNU4-12P-201ENST00000365233 139 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 RNU6-877P-201ENST00000383868 107 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 Y_RNA.453-201ENST00000384223 109 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 AL591034.2-201ENST00000402839 359 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 RNU2-32P-201ENST00000411193 191 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 SNRPEP10-201ENST00000420249 274 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 AC114801.2-201ENST00000503825 781 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 AC025423.5-201ENST00000550230 219 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 AC026371.1-201ENST00000551867 419 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 AC026271.5-201ENST00000577873 130 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 AC245884.12-201ENST00000615364 59 ntBASIC3.63□□□□□ -1.83
SHROOM4Q9ULL8 CBX3P6-201ENST00000430257 527 ntBASIC3.62□□□□□ -1.83
SHROOM4Q9ULL8 AL133396.1-201ENST00000432048 687 ntBASIC3.62□□□□□ -1.83
SHROOM4Q9ULL8 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.62□□□□□ -1.83
SHROOM4Q9ULL8 U8.21-201ENST00000459536 136 ntBASIC3.62□□□□□ -1.83
SHROOM4Q9ULL8 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.62□□□□□ -1.83
SHROOM4Q9ULL8 AC005336.3-201ENST00000623833 2679 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 AC092268.1-201ENST00000342691 405 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 SNORD113-7-201ENST00000363762 77 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 Y_RNA.597-201ENST00000410463 100 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 RN7SKP61-201ENST00000410642 295 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 UBE2V1P4-201ENST00000425374 344 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 AL021397.1-201ENST00000451806 248 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 AP005597.4-201ENST00000526762 229 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 MIR4303-201ENST00000581299 66 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 AC100830.2-201ENST00000581636 240 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 AC063943.3-201ENST00000615562 356 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 SNORD98-201ENST00000636377 67 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 AC024614.3-201ENST00000637860 256 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 KPNA2P1-201ENST00000458289 1591 ntBASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.61□□□□□ -1.83
SHROOM4Q9ULL8 RNU1-23P-201ENST00000363361 144 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 RNY1P14-201ENST00000384426 108 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 EDDM3CP-201ENST00000415977 425 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC092436.3-201ENST00000511788 257 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 RNU6-1332P-201ENST00000516666 104 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC022616.8-201ENST00000533569 253 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 MIR3923-201ENST00000579521 83 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC064836.2-201ENST00000609491 462 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 MIR8081-201ENST00000611533 95 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 FO624990.1-201ENST00000636373 85 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC073869.6-201ENST00000640656 341 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 RNU6-254P-201ENST00000363377 107 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 SNORD32A-201ENST00000364805 84 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 Y_RNA.450-201ENST00000384198 113 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 RNU6-1274P-201ENST00000384557 107 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 RNA5SP338-201ENST00000410495 85 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AL590135.1-201ENST00000422215 156 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC019205.3-201ENST00000424573 156 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC016700.2-201ENST00000446011 156 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC104564.1-201ENST00000493028 407 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC015911.1-201ENST00000495111 156 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 AC008628.2-201ENST00000502605 298 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 MTND1P5-201ENST00000517906 940 ntBASIC3.6□□□□□ -1.83
SHROOM4Q9ULL8 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
SHROOM4Q9ULL8 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 138.9 ms