Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 U2.11-201ENST00000616345 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U2.2-201ENST00000616535 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U2.3-201ENST00000617785 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U2.19-201ENST00000618602 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 RNU2-1-201ENST00000618664 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U2.6-201ENST00000619225 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U2.5-201ENST00000619465 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 U2.10-201ENST00000620268 191 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 AL136221.1-201ENST00000621449 509 ntBASIC2.25□□□□□ -2.05
CPSF3Q9UKF6 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 RNU4-15P-201ENST00000362613 141 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 Y_RNA.135-201ENST00000363439 95 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 SNORA16B-201ENST00000364674 135 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 RNU6-831P-201ENST00000384548 107 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 MIR29B2-201ENST00000385055 81 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 SNORA40.19-201ENST00000390846 128 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 SNORA26.3-201ENST00000391119 136 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 AL030996.1-201ENST00000411430 235 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 ZNF885P-201ENST00000420174 1098 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 AL590135.1-201ENST00000422215 156 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 AL590632.1-201ENST00000424289 371 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 AC019205.3-201ENST00000424573 156 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 AC078809.1-201ENST00000427601 140 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 MTND3P9-201ENST00000429526 346 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 AC016700.2-201ENST00000446011 156 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 RNU7-187P-201ENST00000458985 68 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 AC015911.1-201ENST00000495111 156 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 AC022447.4-201ENST00000504053 364 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 AC007229.1-201ENST00000590455 412 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 AL078605.1-201ENST00000603529 500 ntBASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.24□□□□□ -2.05
CPSF3Q9UKF6 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 AC131280.1-202ENST00000624067 4211 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 RNU6-227P-201ENST00000362865 103 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 SNORA25B-201ENST00000365507 128 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 SNORA36A-201ENST00000384221 132 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 SNORA51.11-201ENST00000384442 131 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 RNU2-48P-201ENST00000410694 191 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 HMGB3P2-201ENST00000411913 584 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 RPL30P16-201ENST00000419341 429 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 AC107032.1-201ENST00000485945 480 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 AC034114.1-201ENST00000520293 285 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 NDUFA5P6-201ENST00000542110 379 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 CPDP1-201ENST00000579660 283 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 MIR3136-201ENST00000583498 78 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 AC078795.3-201ENST00000602913 472 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 AC063943.3-201ENST00000615562 356 ntBASIC2.23□□□□□ -2.05
CPSF3Q9UKF6 AC092268.1-201ENST00000342691 405 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 Y_RNA.212-201ENST00000364177 102 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 Y_RNA.504-201ENST00000384481 104 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 RNU6-95P-201ENST00000384697 107 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 MIR17-201ENST00000385012 84 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 AL356379.1-201ENST00000414105 126 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 AC009161.1-201ENST00000417306 376 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 WARS2P1-201ENST00000429678 537 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 AL513124.1-201ENST00000450410 614 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 MTND1P11-201ENST00000456661 876 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 U8.21-201ENST00000459536 136 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 MTCO1P29-201ENST00000496868 288 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 AC016632.1-201ENST00000503994 196 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 AC096745.1-201ENST00000509945 370 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 RNU6-864P-201ENST00000516256 108 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 AC107953.1-201ENST00000522216 297 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 AC060780.3-201ENST00000589464 80 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 AC023043.2-201ENST00000589678 1026 ntBASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
CPSF3Q9UKF6 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.21□□□□□ -2.05
CPSF3Q9UKF6 ZNF355P-201ENST00000427301 3216 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AC009541.1-201ENST00000438279 2662 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 SNORD114-1-201ENST00000362705 72 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 Y_RNA.86-201ENST00000363020 111 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 Y_RNA.248-201ENST00000364501 109 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 RNU6-142P-201ENST00000384019 107 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 BTF3L4P2-201ENST00000392798 346 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 HMGN2P39-201ENST00000398005 273 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 MIR1261-201ENST00000408659 82 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 Y_RNA.597-201ENST00000410463 100 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 RNU2-32P-201ENST00000411193 191 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 GPM6BP3-201ENST00000442797 145 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 SNORA4.4-201ENST00000515921 135 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 RNU6-358P-201ENST00000516564 75 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AF235103.2-201ENST00000525753 346 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AC018630.3-201ENST00000542637 96 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AC007375.1-201ENST00000554513 578 ntBASIC2.21□□□□□ -2.06
CPSF3Q9UKF6 AC233702.2-202ENST00000562547 291 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 225.2 ms