Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 DLEU2_1.1-201ENST00000612089 120 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 DLEU2_1.2-201ENST00000614667 120 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AC090582.1-201ENST00000636321 199 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 AL450472.1-202ENST00000637286 180 ntBASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.29□□□□□ -2.2
EXOSC4Q9NPD3 Y_RNA.1-201ENST00000352915 104 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 Y_RNA.99-201ENST00000363138 105 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 RNU6-23P-201ENST00000363283 107 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 Y_RNA.296-201ENST00000364930 108 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 RNA5SP190-201ENST00000365222 118 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 RNU6-26P-201ENST00000383985 107 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 Y_RNA.409-201ENST00000383990 98 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 RNU5A-6P-201ENST00000384136 116 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 RNU6-1103P-201ENST00000384150 107 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 RNU6-378P-201ENST00000384324 107 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 MIR517C-201ENST00000385103 95 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 RNA5SP219-201ENST00000390940 113 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 MIR1323-201ENST00000408090 73 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 MIR1289-2-201ENST00000408360 111 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 RNU2-41P-201ENST00000410991 178 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 MTCO3P46-201ENST00000425787 232 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 SNRPEP8-201ENST00000442866 260 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 ATP5EP1-201ENST00000510257 156 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AC079140.3-201ENST00000511111 550 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 RN7SKP298-201ENST00000515950 94 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 MTND4P7-201ENST00000523876 130 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AL160236.1-201ENST00000556317 195 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 MIR3136-201ENST00000583498 78 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AC004223.2-201ENST00000590309 544 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AL158827.2-201ENST00000602494 330 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 RN7SKP299-201ENST00000606679 301 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AP001596.2-201ENST00000608410 312 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 uc_338.34-201ENST00000617467 174 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AC009509.4-201ENST00000619202 509 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AC130454.1-201ENST00000622948 401 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 AL691447.3-201ENST00000635020 330 ntBASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.28□□□□□ -2.2
EXOSC4Q9NPD3 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
EXOSC4Q9NPD3 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 SNORA12.2-201ENST00000391040 156 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 SNORA67.6-201ENST00000391093 99 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AL033519.2-201ENST00000403958 392 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AL606923.1-201ENST00000406616 190 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AC078809.1-201ENST00000427601 140 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 SNRPGP13-201ENST00000442212 177 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AL357134.1-201ENST00000445848 426 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AMD1P1-201ENST00000457220 922 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 RN7SL429P-201ENST00000479090 223 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 RN7SL489P-201ENST00000486185 223 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 RN7SL327P-201ENST00000488659 223 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AC069113.1-201ENST00000517763 267 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AC090115.3-201ENST00000553218 849 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AC027807.1-201ENST00000559921 996 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 MIR3169-201ENST00000578032 83 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 MTND1P15-201ENST00000579262 949 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 MIR3923-201ENST00000579521 83 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AC010620.1-201ENST00000601088 1102 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AP001836.1-201ENST00000604675 523 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 RN7SL853P-201ENST00000617250 223 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AC005609.4-201ENST00000625071 447 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 WWP1P1-201ENST00000466609 2769 ntBASIC1.27□□□□□ -2.21
EXOSC4Q9NPD3 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 Y_RNA.77-201ENST00000362962 107 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 Y_RNA.255-201ENST00000364581 97 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 MTCYBP2-201ENST00000407745 171 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 AL357139.1-201ENST00000407792 426 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 RN7SKP61-201ENST00000410642 295 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 AL663109.1-201ENST00000411498 844 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 CDK8P2-201ENST00000415020 547 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 RPL23AP95-201ENST00000426806 265 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 AL354695.1-201ENST00000427935 228 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 AL133396.1-201ENST00000432048 687 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 HMGB1P18-201ENST00000438801 619 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 RPS29P23-201ENST00000458635 123 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 AC010409.1-201ENST00000487382 476 ntBASIC1.26□□□□□ -2.21
EXOSC4Q9NPD3 AC108078.1-201ENST00000508073 725 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms