Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 RNA5SP213-201ENST00000391031 106 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 ELOCP20-201ENST00000422460 345 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 AC092185.1-201ENST00000491371 97 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 SNORA25.14-201ENST00000516481 132 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 CYCSP23-201ENST00000519781 313 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 EIF4A1P12-201ENST00000551910 141 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 MIR4659A-201ENST00000580269 81 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 AC010999.1-201ENST00000611856 324 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 PCGEM1.1-201ENST00000613431 131 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 AC240442.1-201ENST00000616055 283 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 MIR8062-201ENST00000621515 85 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 MIR7157-201ENST00000635801 60 ntBASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.37□□□□□ -1.87
TRIM39Q9HCM9 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 RNU6-873P-201ENST00000363833 107 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 MIR29B2-201ENST00000385055 81 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 MRPL35P1-201ENST00000404272 572 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 SNORD12B-201ENST00000410433 91 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 PCNPP5-201ENST00000452246 481 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 RPL23AP67-201ENST00000465341 474 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 RPL7P49-201ENST00000471402 708 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 RPL23AP70-201ENST00000483361 460 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 AC145146.1-201ENST00000496370 254 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 MYL12BP1-201ENST00000569826 507 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 AC125232.2-201ENST00000592457 143 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 RPL30P11-203ENST00000598995 310 ntBASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
TRIM39Q9HCM9 AL513302.2-201ENST00000562313 1842 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 RNU4-15P-201ENST00000362613 141 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 RNU6-318P-201ENST00000384283 103 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 RNU6-378P-201ENST00000384324 107 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 MIR487A-201ENST00000385009 80 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 MIR1302-6-201ENST00000408466 90 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 RNA5SP201-201ENST00000410316 124 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 Y_RNA.595-201ENST00000410403 105 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 RNU6-1001P-201ENST00000411265 100 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 RPS27P29-201ENST00000463110 252 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 AC008155.2-201ENST00000464337 397 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 RN7SL442P-201ENST00000473804 320 ntBASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
TRIM39Q9HCM9 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 snoU2_19.1-201ENST00000362361 80 ntBASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 RNA5SP361-201ENST00000362686 118 ntBASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 RNU6-805P-201ENST00000365643 106 ntBASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 RNU6-26P-201ENST00000383985 107 ntBASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 RNU6-926P-201ENST00000384075 107 ntBASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 AL445305.1-201ENST00000432577 575 ntBASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 MTND4LP22-201ENST00000508209 276 ntBASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 Y_RNA.683-201ENST00000516508 93 ntBASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 MIR3671-201ENST00000580455 88 ntBASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 AC006006.1-201ENST00000603082 144 ntBASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.34□□□□□ -1.87
TRIM39Q9HCM9 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.34□□□□□ -1.88
TRIM39Q9HCM9 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 Y_RNA.179-201ENST00000363844 90 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 RNA5SP267-201ENST00000364893 126 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 Y_RNA.461-201ENST00000384263 103 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 SNORA48.8-201ENST00000391324 134 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 MICF-203ENST00000432679 129 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 RPS4XP2-201ENST00000458402 793 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 AC073901.1-201ENST00000462471 408 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 RNA5SP380-201ENST00000517190 98 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 AP003733.2-201ENST00000529409 171 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 MIR376A1-201ENST00000616574 68 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms