Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AL590240.4-201ENST00000616908 390 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 AC139792.3-201ENST00000623525 224 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 AL691447.3-201ENST00000635020 330 ntBASIC2.58□□□□□ -2
CHMP4AQ9BY43 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.58□□□□□ -2
CHMP4AQ9BY43 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CHMP4AQ9BY43 RNU1-76P-201ENST00000362903 159 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 Y_RNA.409-201ENST00000383990 98 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 RNA5SP100-201ENST00000410903 110 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 RNA5SP59-201ENST00000410922 110 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 AC012306.1-201ENST00000423267 114 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.57□□□□□ -2
CHMP4AQ9BY43 RNU6-261P-201ENST00000459506 102 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC2.57□□□□□ -2
CHMP4AQ9BY43 AC025465.3-201ENST00000510570 311 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.57□□□□□ -2
CHMP4AQ9BY43 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC2.57□□□□□ -2
CHMP4AQ9BY43 CBX3P4-201ENST00000538909 354 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.57□□□□□ -2
CHMP4AQ9BY43 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.57□□□□□ -2
CHMP4AQ9BY43 AC078795.3-201ENST00000602913 472 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC2.57□□□□□ -2
CHMP4AQ9BY43 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.57□□□□□ -2
CHMP4AQ9BY43 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
CHMP4AQ9BY43 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CHMP4AQ9BY43 MTND5P9-201ENST00000503854 1755 ntBASIC2.56□□□□□ -2
CHMP4AQ9BY43 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.56□□□□□ -2
CHMP4AQ9BY43 USP9YP14-201ENST00000430663 563 ntBASIC2.56□□□□□ -2
CHMP4AQ9BY43 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.56□□□□□ -2
CHMP4AQ9BY43 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.56□□□□□ -2
CHMP4AQ9BY43 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.56□□□□□ -2
CHMP4AQ9BY43 SNORA40.12-201ENST00000516329 111 ntBASIC2.56□□□□□ -2
CHMP4AQ9BY43 RNU2-34P-201ENST00000516534 121 ntBASIC2.56□□□□□ -2
CHMP4AQ9BY43 AC026470.2-201ENST00000561492 181 ntBASIC2.56□□□□□ -2
CHMP4AQ9BY43 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC2.56□□□□□ -2
CHMP4AQ9BY43 SUB1P4-201ENST00000566062 339 ntBASIC2.56□□□□□ -2
CHMP4AQ9BY43 Z99129.1-201ENST00000612510 255 ntBASIC2.56□□□□□ -2
CHMP4AQ9BY43 AL158209.2-201ENST00000619266 216 ntBASIC2.56□□□□□ -2
CHMP4AQ9BY43 MIR6863-201ENST00000636112 90 ntBASIC2.56□□□□□ -2
CHMP4AQ9BY43 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
CHMP4AQ9BY43 MTND5P26-201ENST00000426018 1752 ntBASIC2.55□□□□□ -2
CHMP4AQ9BY43 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.55□□□□□ -2
CHMP4AQ9BY43 Z83846.1-201ENST00000446798 265 ntBASIC2.55□□□□□ -2
CHMP4AQ9BY43 MTND1P29-201ENST00000448112 647 ntBASIC2.55□□□□□ -2
CHMP4AQ9BY43 AC016925.1-201ENST00000458303 298 ntBASIC2.55□□□□□ -2
CHMP4AQ9BY43 RPS23P5-201ENST00000495419 428 ntBASIC2.55□□□□□ -2
CHMP4AQ9BY43 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC2.55□□□□□ -2
CHMP4AQ9BY43 AC093534.1-201ENST00000504977 132 ntBASIC2.55□□□□□ -2
CHMP4AQ9BY43 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.55□□□□□ -2
CHMP4AQ9BY43 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.55□□□□□ -2
CHMP4AQ9BY43 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.55□□□□□ -2
CHMP4AQ9BY43 MIR4424-201ENST00000585257 86 ntBASIC2.55□□□□□ -2
CHMP4AQ9BY43 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.55□□□□□ -2
CHMP4AQ9BY43 AC012493.3-201ENST00000604494 112 ntBASIC2.55□□□□□ -2
CHMP4AQ9BY43 AC017083.3-201ENST00000609955 700 ntBASIC2.55□□□□□ -2
CHMP4AQ9BY43 HULC.1-201ENST00000612720 240 ntBASIC2.55□□□□□ -2
CHMP4AQ9BY43 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
CHMP4AQ9BY43 RNU6-227P-201ENST00000362865 103 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 RNU6-259P-201ENST00000383999 107 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 MIR504-201ENST00000385065 83 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.54□□□□□ -2
CHMP4AQ9BY43 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.54□□□□□ -2
CHMP4AQ9BY43 MIR300-201ENST00000401138 83 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 MIR208B-201ENST00000401172 77 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 RNU2-2P-201ENST00000410396 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 RNU2-66P-201ENST00000410650 161 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.54□□□□□ -2
CHMP4AQ9BY43 AC027124.2-201ENST00000428249 105 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 RPL7P54-201ENST00000438336 674 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.54□□□□□ -2
CHMP4AQ9BY43 AC087477.1-201ENST00000465747 340 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 AC107393.1-201ENST00000512403 346 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 AC245008.1-201ENST00000608123 476 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.15-201ENST00000611544 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.16-201ENST00000613119 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.12-201ENST00000613778 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.20-201ENST00000613956 192 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 MIR8074-201ENST00000615081 81 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.9-201ENST00000615427 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.11-201ENST00000616345 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.2-201ENST00000616535 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.3-201ENST00000617785 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.19-201ENST00000618602 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 RNU2-1-201ENST00000618664 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 AC103705.1-201ENST00000619013 241 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.6-201ENST00000619225 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.5-201ENST00000619465 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 U2.10-201ENST00000620268 191 ntBASIC2.54□□□□□ -2
CHMP4AQ9BY43 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.54□□□□□ -2
CHMP4AQ9BY43 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC2.53□□□□□ -2
CHMP4AQ9BY43 RNU6-1322P-201ENST00000364309 107 ntBASIC2.53□□□□□ -2
CHMP4AQ9BY43 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.53□□□□□ -2
CHMP4AQ9BY43 RNA5SP219-201ENST00000390940 113 ntBASIC2.53□□□□□ -2
CHMP4AQ9BY43 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.53□□□□□ -2
CHMP4AQ9BY43 RPS26P42-201ENST00000413485 326 ntBASIC2.53□□□□□ -2
CHMP4AQ9BY43 AC069257.2-201ENST00000441819 155 ntBASIC2.53□□□□□ -2
CHMP4AQ9BY43 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.53□□□□□ -2
CHMP4AQ9BY43 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms