Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC28BQ9BUN5 AC016256.1-201ENST00000547971 354 ntBASIC2.03□□□□□ -2.08
CCDC28BQ9BUN5 IMMP1LP2-201ENST00000552954 492 ntBASIC2.03□□□□□ -2.08
CCDC28BQ9BUN5 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC2.03□□□□□ -2.08
CCDC28BQ9BUN5 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.03□□□□□ -2.08
CCDC28BQ9BUN5 AC243960.4-201ENST00000600532 288 ntBASIC2.03□□□□□ -2.08
CCDC28BQ9BUN5 AC019193.3-201ENST00000609144 554 ntBASIC2.03□□□□□ -2.08
CCDC28BQ9BUN5 AC063943.3-201ENST00000615562 356 ntBASIC2.03□□□□□ -2.08
CCDC28BQ9BUN5 AC099654.5-201ENST00000636479 350 ntBASIC2.03□□□□□ -2.08
CCDC28BQ9BUN5 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 MTND4P27-201ENST00000450813 1354 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 Y_RNA.151-201ENST00000363566 112 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-596P-201ENST00000365395 98 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 Y_RNA.482-201ENST00000384377 111 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-790P-201ENST00000384479 105 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 MIR186-201ENST00000384988 86 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 MIR517A-201ENST00000385001 87 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 SNORA11.1-201ENST00000408133 129 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 MIR548F5-201ENST00000408421 86 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-1140P-201ENST00000410517 106 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 Y_RNA.604-201ENST00000410574 102 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 RPL37P10-201ENST00000412884 288 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 AL133396.1-201ENST00000432048 687 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 AC093019.1-201ENST00000443135 252 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 RPS3AP12-201ENST00000443616 753 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 RNA5SP233-201ENST00000459153 113 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 RPL30P12-201ENST00000474666 353 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 AC022447.4-201ENST00000504053 364 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 RNU7-193P-201ENST00000516723 65 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 MIR3199-1-201ENST00000582434 88 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 POLR3GP2-201ENST00000588366 668 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 AC009994.1-201ENST00000606889 253 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 AC069294.1-201ENST00000608397 350 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.02□□□□□ -2.09
CCDC28BQ9BUN5 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 AC092268.1-201ENST00000342691 405 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-655P-201ENST00000362858 107 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-1210P-201ENST00000363775 107 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 SNORA80A-201ENST00000363922 136 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 RNA5SP387-201ENST00000364226 106 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-867P-201ENST00000364956 107 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-234P-201ENST00000365229 104 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 CBX3P9-201ENST00000402326 552 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 EIF1AXP1-201ENST00000419267 435 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 RPL30P4-201ENST00000429309 333 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 RPS3AP52-201ENST00000435639 297 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 EEF1B2P7-201ENST00000451177 676 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 SNORD5.1-201ENST00000458800 75 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 RPL30P1-201ENST00000488676 339 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 AC016632.1-201ENST00000503994 196 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 ACA59.1-201ENST00000515966 143 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-507P-201ENST00000516045 100 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-1016P-201ENST00000516689 94 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 SNRPGP18-201ENST00000553000 214 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 AC105245.1-201ENST00000581934 244 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 MIR3136-201ENST00000583498 78 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 MIR6128-201ENST00000615528 109 ntBASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
CCDC28BQ9BUN5 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-212P-201ENST00000362642 104 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 Y_RNA.333-201ENST00000365274 102 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-784P-201ENST00000384330 106 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 MIR521-1-201ENST00000384902 87 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 MT-TD-201ENST00000387419 68 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 RNU6-220P-201ENST00000390919 107 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 SNORA26.3-201ENST00000391119 136 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 NDUFB4P4-201ENST00000404822 243 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 RNA5SP489-201ENST00000410986 109 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 RNU2-41P-201ENST00000410991 178 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 AIMP1P2-201ENST00000425294 312 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 MTND3P9-201ENST00000429526 346 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 AC244670.1-201ENST00000436879 112 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 Y_RNA.635-201ENST00000459041 101 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 AL121594.1-201ENST00000475906 575 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2□□□□□ -2.09
CCDC28BQ9BUN5 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2□□□□□ -2.09
CCDC28BQ9BUN5 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2□□□□□ -2.09
CCDC28BQ9BUN5 RNU2-53P-201ENST00000516257 147 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2□□□□□ -2.09
CCDC28BQ9BUN5 MIR3122-201ENST00000577243 73 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 LARP7P3-201ENST00000579888 337 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2□□□□□ -2.09
CCDC28BQ9BUN5 AC113139.1-201ENST00000605049 239 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 AC009233.1-201ENST00000616477 371 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 AC091932.3-201ENST00000624223 323 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
CCDC28BQ9BUN5 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2□□□□□ -2.09
CCDC28BQ9BUN5 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC1.99□□□□□ -2.09
CCDC28BQ9BUN5 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 134.4 ms