Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 AL450472.1-202ENST00000637286 180 ntBASIC2.19□□□□□ -2.06
CCDC3Q9BQI4 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 SNORA32.2-201ENST00000384049 122 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AL079342.1-201ENST00000401460 267 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AL139396.1-201ENST00000421137 167 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AL591806.2-201ENST00000433122 173 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 IFNA11P-201ENST00000446352 526 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 MTND3P10-201ENST00000450967 341 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 PCMTD1P1-201ENST00000455560 355 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 RPS27P27-201ENST00000498779 255 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 PTP4A1P4-201ENST00000512479 322 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AL117351.2-201ENST00000513571 157 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 RNU6-567P-201ENST00000516746 107 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 HSPE1P4-201ENST00000550617 308 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AC021231.3-201ENST00000558497 370 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AC093249.1-201ENST00000567049 203 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 DEFB122-202ENST00000569013 197 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 FGF7P1-201ENST00000582820 288 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AC005520.5-201ENST00000613926 164 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 MIR6132-201ENST00000622083 109 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 SNORA43.4-201ENST00000629559 138 ntBASIC2.18□□□□□ -2.06
CCDC3Q9BQI4 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 RNU6-593P-201ENST00000364716 112 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 RNU6-933P-201ENST00000384424 107 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 SNORA64-201ENST00000384674 134 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 RNU6-876P-201ENST00000391295 104 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 MIR548K-201ENST00000408406 116 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AC018634.1-201ENST00000437554 401 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 USP9YP8-201ENST00000441913 500 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AL353752.1-201ENST00000454946 260 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 PMCHL2-203ENST00000457791 237 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 RNU7-187P-201ENST00000458985 68 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AC140059.1-201ENST00000489238 361 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AC104564.1-201ENST00000493028 407 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 SNORA31.11-201ENST00000516528 139 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 RNU6-586P-201ENST00000517265 104 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AP005639.2-201ENST00000527592 928 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AL034555.1-201ENST00000604816 211 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 MIR6766-201ENST00000622641 72 ntBASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC3Q9BQI4 AP006437.1-201ENST00000641440 3685 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 RNA5SP125-201ENST00000364843 120 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 Y_RNA.339-201ENST00000365325 102 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 Y_RNA.390-201ENST00000383932 102 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 MIR561-201ENST00000385216 97 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 MIR764-201ENST00000390811 85 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 MTCYBP2-201ENST00000407745 171 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 SNORA11.4-201ENST00000408823 129 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 AL590632.1-201ENST00000424289 371 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 CBX3P6-201ENST00000430257 527 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 Y_RNA.638-201ENST00000459374 113 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 AC090515.1-201ENST00000465295 476 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 AC108210.2-201ENST00000503681 201 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 Y_RNA.691-201ENST00000516611 103 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 AC124303.1-201ENST00000605703 360 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 AL161423.1-201ENST00000613700 262 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 AC245884.12-201ENST00000615364 59 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 SNORD98-201ENST00000636377 67 ntBASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
CCDC3Q9BQI4 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.15□□□□□ -2.06
CCDC3Q9BQI4 SNORA38-201ENST00000363946 132 ntBASIC2.15□□□□□ -2.07
CCDC3Q9BQI4 RNU4-56P-201ENST00000364700 142 ntBASIC2.15□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms