Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL359314.1-201ENST00000616913 261 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 MTND4LP32-201ENST00000636111 270 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 AC099654.5-201ENST00000636479 350 ntBASIC2.27□□□□□ -2.05
USP28Q96RU2 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.27□□□□□ -2.05
USP28Q96RU2 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.26□□□□□ -2.05
USP28Q96RU2 RNU6-527P-201ENST00000363425 104 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 SNORD116-29-201ENST00000384516 83 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 MIR517A-201ENST00000385001 87 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 AL355497.1-201ENST00000406262 551 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 RNU6-293P-201ENST00000411259 106 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 RPL37P10-201ENST00000412884 288 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 AC074085.1-201ENST00000413598 418 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 AC074117.2-201ENST00000417130 397 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.26□□□□□ -2.05
USP28Q96RU2 BX276092.3-201ENST00000424182 230 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 Z82205.1-201ENST00000428456 297 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 RPL30P4-201ENST00000429309 333 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 USP9YP30-201ENST00000430729 455 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 Z98742.2-201ENST00000431564 187 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 AC243964.1-201ENST00000441814 261 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 AC124916.1-201ENST00000444020 547 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 FTH1P25-201ENST00000447665 469 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.26□□□□□ -2.05
USP28Q96RU2 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2.26□□□□□ -2.05
USP28Q96RU2 Y_RNA.632-201ENST00000459189 102 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 CR383656.8-201ENST00000549046 145 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.26□□□□□ -2.05
USP28Q96RU2 FRG2DP-202ENST00000566967 323 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 MIR1273D-201ENST00000577266 86 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
USP28Q96RU2 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC2.26□□□□□ -2.05
USP28Q96RU2 AC113139.1-201ENST00000605049 239 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 AC241585.2-209ENST00000638217 143 ntBASIC2.26□□□□□ -2.05
USP28Q96RU2 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.25□□□□□ -2.05
USP28Q96RU2 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
USP28Q96RU2 AC009487.4-201ENST00000624969 3585 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 RNU4-79P-201ENST00000362764 141 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 RNU6-486P-201ENST00000363116 107 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 RNU6-601P-201ENST00000384540 107 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
USP28Q96RU2 RPS29P13-201ENST00000402041 169 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 SNORA3.2-201ENST00000408221 125 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 RNU6-370P-201ENST00000411008 104 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 RNA5SP270-201ENST00000411361 118 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 AL139396.1-201ENST00000421137 167 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 HMGN2P38-201ENST00000423806 265 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 MTND3P9-201ENST00000429526 346 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 AL445646.1-201ENST00000431784 216 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.25□□□□□ -2.05
USP28Q96RU2 AC007969.2-201ENST00000441891 191 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.25□□□□□ -2.05
USP28Q96RU2 RPS29P27-201ENST00000463711 170 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 RPL9P9-202ENST00000466501 579 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.25□□□□□ -2.05
USP28Q96RU2 AC091874.1-201ENST00000511402 339 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 AC008413.1-201ENST00000511864 177 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 RNU6-559P-201ENST00000516151 98 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 Y_RNA.670-201ENST00000516255 105 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 AC109479.2-201ENST00000517842 174 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 APOOP3-201ENST00000536787 586 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.25□□□□□ -2.05
USP28Q96RU2 MIR3935-201ENST00000583472 104 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 AL133215.3-201ENST00000609801 448 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 uc_338.14-201ENST00000613162 166 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.25□□□□□ -2.05
USP28Q96RU2 MTND4P29-201ENST00000503122 1372 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.24□□□□□ -2.05
USP28Q96RU2 AC006026.1-201ENST00000444025 1803 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 AL359854.1-201ENST00000614203 1594 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 Y_RNA.394-201ENST00000383942 103 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 RNU6-842P-201ENST00000384269 107 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 MIR23A-201ENST00000385245 73 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 MT-TD-201ENST00000387419 68 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.24□□□□□ -2.05
USP28Q96RU2 U6atac.2-201ENST00000408644 118 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 RN7SKP223-201ENST00000410582 62 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 AC003685.2-201ENST00000422795 395 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 AL645568.3-201ENST00000433683 316 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.24□□□□□ -2.05
USP28Q96RU2 AC096638.1-201ENST00000444678 216 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.24□□□□□ -2.05
USP28Q96RU2 RNU6-1037P-201ENST00000459571 107 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 RPL7P42-201ENST00000481005 679 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.24□□□□□ -2.05
USP28Q96RU2 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC2.24□□□□□ -2.05
USP28Q96RU2 AC116337.1-201ENST00000509680 687 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 AC026782.1-201ENST00000512952 449 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.24□□□□□ -2.05
USP28Q96RU2 RNA5SP112-201ENST00000515937 99 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 IMMP1LP2-201ENST00000552954 492 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 CPDP1-201ENST00000579660 283 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 MIR6852-201ENST00000621699 66 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 AC022140.2-201ENST00000623500 188 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 MIR219B-201ENST00000637023 88 ntBASIC2.24□□□□□ -2.05
USP28Q96RU2 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
USP28Q96RU2 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.24□□□□□ -2.05
USP28Q96RU2 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.23□□□□□ -2.05
USP28Q96RU2 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
USP28Q96RU2 Y_RNA.404-201ENST00000383978 102 ntBASIC2.23□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms