Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 MTND5P26-201ENST00000426018 1752 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 RNU6-234P-201ENST00000365229 104 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 RPL31P63-201ENST00000422565 375 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.88□□□□□ -2.11
ZNF560Q96MR9 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.88□□□□□ -2.11
ZNF560Q96MR9 HMGN2P18-201ENST00000450680 270 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.88□□□□□ -2.11
ZNF560Q96MR9 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.88□□□□□ -2.11
ZNF560Q96MR9 RNU6-1037P-201ENST00000459571 107 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 AC091885.1-201ENST00000506658 268 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.88□□□□□ -2.11
ZNF560Q96MR9 SNORA25.15-201ENST00000516487 89 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 RNU6-250P-201ENST00000516958 103 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 CENPUP1-201ENST00000526649 1202 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 AC021231.3-201ENST00000558497 370 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 AC015712.3-201ENST00000559380 164 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 PIGPP4-201ENST00000584447 307 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.88□□□□□ -2.11
ZNF560Q96MR9 AC078795.3-201ENST00000602913 472 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 AC025754.2-201ENST00000606491 432 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 RMST_6.1-201ENST00000611980 203 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 PCGEM1.1-201ENST00000613431 131 ntBASIC1.88□□□□□ -2.11
ZNF560Q96MR9 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
ZNF560Q96MR9 U3.9-201ENST00000363823 204 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 Y_RNA.332-201ENST00000365271 113 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.87□□□□□ -2.11
ZNF560Q96MR9 RNU6-259P-201ENST00000383999 107 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 RNU6-160P-201ENST00000384591 107 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 MIR597-201ENST00000384968 97 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 RNA5SP489-201ENST00000410986 109 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 POLHP1-201ENST00000411806 470 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 CYCSP49-201ENST00000420810 319 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.87□□□□□ -2.11
ZNF560Q96MR9 AL645568.3-201ENST00000433683 316 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.87□□□□□ -2.11
ZNF560Q96MR9 HMGN2P23-201ENST00000456759 269 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 AC005741.1-201ENST00000511094 432 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 RNA5SP401-201ENST00000515920 127 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 MIR449C-201ENST00000516047 92 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 RNA5SP490-201ENST00000517141 136 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 AC087854.1-201ENST00000519706 414 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 AP005660.1-201ENST00000522972 293 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 AC109446.1-201ENST00000566172 220 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 CYP4A27P-201ENST00000567218 190 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 MTND1P15-201ENST00000579262 949 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 NBR2-204ENST00000587322 63 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 BNIP3P25-201ENST00000596023 559 ntBASIC1.87□□□□□ -2.11
ZNF560Q96MR9 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.87□□□□□ -2.11
ZNF560Q96MR9 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
ZNF560Q96MR9 SNORA69-201ENST00000383895 132 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 RNU6-38P-201ENST00000384085 107 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 Y_RNA.504-201ENST00000384481 104 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 SNORD37.1-201ENST00000390968 65 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 AL627390.1-201ENST00000396055 340 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 AL033519.2-201ENST00000403958 392 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 RNA5SP501-201ENST00000410990 112 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC1.86□□□□□ -2.11
ZNF560Q96MR9 AL035666.1-201ENST00000446195 348 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 MTND1P29-201ENST00000448112 647 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 AC091874.1-201ENST00000511402 339 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 RNU6-1069P-201ENST00000516612 133 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.86□□□□□ -2.11
ZNF560Q96MR9 NTS-203ENST00000551529 801 ntTSL 3 BASIC1.86□□□□□ -2.11
ZNF560Q96MR9 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.86□□□□□ -2.11
ZNF560Q96MR9 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.86□□□□□ -2.11
ZNF560Q96MR9 MIR4255-201ENST00000579351 72 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 MIR3683-201ENST00000580847 82 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 MIR3124-201ENST00000582636 67 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 Z98751.3-201ENST00000604447 521 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 MIR502-201ENST00000606349 86 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 Z99129.1-201ENST00000612510 255 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 AC005520.5-201ENST00000613926 164 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 AC233981.2-201ENST00000611524 1614 ntBASIC1.86□□□□□ -2.11
ZNF560Q96MR9 Y_RNA.51-201ENST00000362725 102 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 SNORD116-2-201ENST00000384274 95 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 SNORD116-6-201ENST00000384711 96 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 SNORD73A-201ENST00000386062 65 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 RNU2-66P-201ENST00000410650 161 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.85□□□□□ -2.11
ZNF560Q96MR9 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.85□□□□□ -2.11
ZNF560Q96MR9 FTH1P25-201ENST00000447665 469 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 AC007547.1-201ENST00000462177 490 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 SRRM1P2-201ENST00000464531 1192 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.85□□□□□ -2.11
ZNF560Q96MR9 EIF4A1P12-201ENST00000551910 141 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.85□□□□□ -2.11
ZNF560Q96MR9 AC022254.1-201ENST00000567857 235 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 RPL17P51-201ENST00000605218 238 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 AL136221.1-201ENST00000621449 509 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.85□□□□□ -2.11
ZNF560Q96MR9 AC130454.1-201ENST00000622948 401 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 SNORA43.4-201ENST00000629559 138 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 MIR6863-201ENST00000636112 90 ntBASIC1.85□□□□□ -2.11
ZNF560Q96MR9 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.84□□□□□ -2.11
ZNF560Q96MR9 RNU6-23P-201ENST00000363283 107 ntBASIC1.84□□□□□ -2.11
ZNF560Q96MR9 RNA5SP493-201ENST00000364115 91 ntBASIC1.84□□□□□ -2.11
ZNF560Q96MR9 RNU4-66P-201ENST00000365199 138 ntBASIC1.84□□□□□ -2.11
ZNF560Q96MR9 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms