Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RNU6-89P-201ENST00000606519 100 ntBASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
CCDC54Q8NEL0 AP000560.1-201ENST00000624150 1937 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.38-201ENST00000362617 102 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 RNU6-82P-201ENST00000363970 107 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.318-201ENST00000365131 97 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 AP000275.1-201ENST00000411943 390 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 CBX3P6-201ENST00000430257 527 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 RNU1-98P-201ENST00000458992 160 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 AC083904.1-201ENST00000487828 231 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 AC107401.1-201ENST00000503426 685 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 AC115990.1-201ENST00000526957 301 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 AC104581.2-201ENST00000572227 430 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 MIR4255-201ENST00000579351 72 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 Z98751.3-201ENST00000604447 521 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 PCGEM1.1-201ENST00000613431 131 ntBASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
CCDC54Q8NEL0 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 AP000648.3-201ENST00000623539 4507 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 RNU6-451P-201ENST00000362921 107 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 RNU6-1085P-201ENST00000363576 107 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 RNU6-1090P-201ENST00000364065 94 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 RNU6-1329P-201ENST00000365664 107 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 MIR583-201ENST00000384846 75 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 RNA5SP212-201ENST00000391223 107 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 BTF3L4P2-201ENST00000392798 346 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 RPL17P50-201ENST00000396131 546 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 RNA5SP501-201ENST00000410990 112 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 RNU2-41P-201ENST00000410991 178 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 SRIP3-201ENST00000413200 219 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 MTCO1P20-201ENST00000425366 358 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 AC078809.1-201ENST00000427601 140 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 MRPS10P2-201ENST00000431226 381 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 HMGN2P18-201ENST00000450680 270 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 RNU7-66P-201ENST00000459469 62 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 UBE2DNL-203ENST00000474922 222 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.654-201ENST00000497848 106 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.665-201ENST00000516177 98 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 SNORD60.2-201ENST00000516883 86 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 AL512360.1-201ENST00000555346 234 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 AC110588.1-201ENST00000559699 137 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 AC026271.5-201ENST00000577873 130 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 MIR3169-201ENST00000578032 83 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 AC010525.2-201ENST00000590920 195 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 AC068137.3-201ENST00000639191 341 ntBASIC1.49□□□□□ -2.17
CCDC54Q8NEL0 MTND4P23-201ENST00000447723 1363 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 U8.2-201ENST00000363156 134 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 RNU6-1317P-201ENST00000364582 104 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.332-201ENST00000365271 113 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.504-201ENST00000384481 104 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.517-201ENST00000384551 106 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 MIR9-3-201ENST00000385084 90 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.615-201ENST00000410769 117 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 RNU6-1245P-201ENST00000411130 106 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 RPL32P28-201ENST00000443577 397 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AMD1P1-201ENST00000457220 922 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AC027575.1-201ENST00000481064 460 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AC008628.2-201ENST00000502605 298 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AC021146.2-201ENST00000504736 556 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AC008834.1-201ENST00000511612 175 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 RNVU1-2-201ENST00000516326 135 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 RNU6-612P-201ENST00000516909 102 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AC069113.1-201ENST00000517763 267 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AC087441.2-201ENST00000529141 262 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AC022254.1-201ENST00000567857 235 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 MIR3941-201ENST00000582572 103 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 MIR4713-201ENST00000582691 75 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 MIR3136-201ENST00000583498 78 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 AL590240.4-201ENST00000616908 390 ntBASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.48□□□□□ -2.17
CCDC54Q8NEL0 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 MIR126-201ENST00000362291 85 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.111-201ENST00000363248 100 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 RNU4-40P-201ENST00000364351 143 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.231-201ENST00000364358 102 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.256-201ENST00000364594 104 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 Y_RNA.554-201ENST00000384672 102 ntBASIC1.47□□□□□ -2.17
CCDC54Q8NEL0 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms