Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC116165.2-201ENST00000616705 206 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 AC019226.2-201ENST00000625973 424 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 AC099654.5-201ENST00000636479 350 ntBASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
CCDC112Q8NEF3 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 RNU1-124P-201ENST00000363861 145 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 SNORA63D-201ENST00000364359 132 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 RNU6-692P-201ENST00000384496 107 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 MIR194-1-201ENST00000384892 85 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 AC010975.2-201ENST00000427781 588 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 PGBD4P5-201ENST00000445958 426 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 SNORD116-28-201ENST00000516123 91 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 AL512310.8-201ENST00000550183 120 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 MTND4P33-201ENST00000556706 766 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 AP000811.1-201ENST00000603803 651 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 AL359999.1-201ENST00000604513 294 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 AL451064.1-201ENST00000607718 471 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 MIR8065-201ENST00000620577 100 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 AC027335.2-201ENST00000624030 375 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 AL445984.1-201ENST00000637834 659 ntBASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC0.88□□□□□ -2.27
CCDC112Q8NEF3 RNU6-862P-201ENST00000362804 105 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 RNU6-1141P-201ENST00000364520 107 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 SNORA32.2-201ENST00000384049 122 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 Y_RNA.576-201ENST00000384781 102 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 RNU6-293P-201ENST00000411259 106 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 RNU6-387P-201ENST00000411331 105 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 ELOCP4-201ENST00000420090 333 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 MTATP6P16-201ENST00000434543 526 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AC244670.1-201ENST00000436879 112 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 snoU13.30-201ENST00000458951 104 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 RNU6-1220P-201ENST00000517126 108 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AC022616.3-201ENST00000523940 148 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 CYP3A137P-201ENST00000562436 69 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AC109446.1-201ENST00000566172 220 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 MZT1P2-201ENST00000604387 248 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AL121992.2-201ENST00000606262 256 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AC108706.1-201ENST00000611053 297 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 AC106800.4-201ENST00000614905 153 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC0.87□□□□□ -2.27
CCDC112Q8NEF3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNU6-37P-201ENST00000362692 107 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNU5F-6P-201ENST00000362979 116 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 SNORD113-6-201ENST00000363345 75 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNU6-11P-201ENST00000364234 107 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNU6-1019P-201ENST00000364424 107 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNU6-25P-201ENST00000383873 107 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNU6-968P-201ENST00000384076 107 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNU6-48P-201ENST00000384161 107 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 SNORA29-201ENST00000384183 140 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNU6-16P-201ENST00000384385 107 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNU6-15P-201ENST00000384534 107 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNU6-29P-201ENST00000384637 107 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNU6-1176P-201ENST00000390955 107 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 EBAG9P1-201ENST00000418955 543 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AL590135.1-201ENST00000422215 156 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC019205.3-201ENST00000424573 156 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AL365184.2-201ENST00000431139 435 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC016700.2-201ENST00000446011 156 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC007547.1-201ENST00000462177 490 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC015911.1-201ENST00000495111 156 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 UBE2V1P12-201ENST00000503954 474 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC079140.3-201ENST00000511111 550 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC074344.1-201ENST00000512823 224 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 RNA5SP480-201ENST00000516840 109 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC136932.1-201ENST00000574771 208 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 HMGN1P30-201ENST00000589286 268 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC069114.2-201ENST00000604699 304 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 BX284668.6-201ENST00000606899 438 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AC009878.1-201ENST00000621819 340 ntBASIC0.86□□□□□ -2.27
CCDC112Q8NEF3 AL159152.1-201ENST00000635019 2587 ntBASIC0.85□□□□□ -2.27
CCDC112Q8NEF3 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
CCDC112Q8NEF3 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
CCDC112Q8NEF3 MIR373-201ENST00000362273 69 ntBASIC0.85□□□□□ -2.27
CCDC112Q8NEF3 RNU6-501P-201ENST00000364072 100 ntBASIC0.85□□□□□ -2.27
CCDC112Q8NEF3 SNORD32A-201ENST00000364805 84 ntBASIC0.85□□□□□ -2.27
CCDC112Q8NEF3 Y_RNA.324-201ENST00000365165 102 ntBASIC0.85□□□□□ -2.27
CCDC112Q8NEF3 SNORD115-7-201ENST00000365306 82 ntBASIC0.85□□□□□ -2.27
CCDC112Q8NEF3 RNU6-438P-201ENST00000365561 103 ntBASIC0.85□□□□□ -2.27
CCDC112Q8NEF3 SNORA25-201ENST00000384384 134 ntBASIC0.85□□□□□ -2.27
CCDC112Q8NEF3 RNU6-45P-201ENST00000384471 107 ntBASIC0.85□□□□□ -2.27
CCDC112Q8NEF3 RNU6-1065P-201ENST00000384513 106 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms