Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MIR1294-201ENST00000408503 142 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 MIR1277-201ENST00000408536 78 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-1148P-201ENST00000410992 104 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 OR6C66P-201ENST00000414917 930 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 RPL30P16-201ENST00000419341 429 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 MTND1P2-201ENST00000430604 821 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC092989.1-201ENST00000481235 277 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC108210.2-201ENST00000503681 201 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC104806.1-201ENST00000508720 308 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC105417.1-201ENST00000514691 285 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 RNA5SP401-201ENST00000515920 127 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 HIF1AP1-201ENST00000553642 175 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 MIR4285-201ENST00000581001 85 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC073539.2-201ENST00000597113 165 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC123912.5-201ENST00000605470 343 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC008945.2-201ENST00000606056 604 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC008536.2-201ENST00000607284 349 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC104458.1-201ENST00000608243 463 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 U6atac.1-201ENST00000616025 117 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 AC024614.3-201ENST00000637860 256 ntBASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.82□□□□□ -2.12
ZNF540Q8NDQ6 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-38P-201ENST00000384085 107 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 SNORA16.2-201ENST00000390991 127 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 MTATP6P13-201ENST00000438531 667 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 AC007969.2-201ENST00000441891 191 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 NFU1P2-201ENST00000448700 469 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 FAM206BP-201ENST00000510179 541 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 RNU1-86P-201ENST00000516108 154 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 RNU1-107P-201ENST00000516617 154 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 RNA5SP503-201ENST00000517047 117 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 MTCO3P23-201ENST00000561363 289 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 SNORA59B-202ENST00000578183 701 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 AP000907.4-201ENST00000604143 237 ntBASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC1.81□□□□□ -2.12
ZNF540Q8NDQ6 RNU4-42P-201ENST00000364738 142 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 Y_RNA.481-201ENST00000384373 102 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 SNORA64-201ENST00000384674 134 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-482P-201ENST00000391068 107 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 RNU2-29P-201ENST00000410423 189 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 MRPS10P2-201ENST00000431226 381 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 AL591806.2-201ENST00000433122 173 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 MTCYBP18-201ENST00000501056 747 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 AC022447.4-201ENST00000504053 364 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 MTND1P35-201ENST00000526739 508 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 AC015712.3-201ENST00000559380 164 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 MIR4769-201ENST00000584126 77 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 AL162413.1-201ENST00000603198 110 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 AC010900.2-201ENST00000604508 210 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 MTND4P14-201ENST00000435799 1354 ntBASIC1.8□□□□□ -2.12
ZNF540Q8NDQ6 ZNF355P-201ENST00000427301 3216 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-661P-201ENST00000362409 107 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-1303P-201ENST00000364841 107 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 Y_RNA.295-201ENST00000364918 102 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 Y_RNA.303-201ENST00000364998 94 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-715P-201ENST00000365204 103 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-116P-201ENST00000384042 109 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 AL079342.1-201ENST00000401460 267 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 RNU2-3P-201ENST00000410144 191 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 NCOR1P3-201ENST00000420479 303 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 AL445685.2-201ENST00000422551 342 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 SEPT14P3-201ENST00000439401 183 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 AL732372.2-207ENST00000445840 183 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 SEPT14P2-201ENST00000453405 183 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 HMGN2P26-201ENST00000463169 339 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 AC104136.1-201ENST00000512969 394 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 SEPT14P4-201ENST00000513445 186 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 RNU6-991P-201ENST00000516168 107 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 FO082796.1-201ENST00000523795 183 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 MIR4801-201ENST00000582704 82 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 AC010525.2-201ENST00000590920 195 ntBASIC1.79□□□□□ -2.12
ZNF540Q8NDQ6 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms