Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 snoU13.3-201ENST00000459441 104 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 RPS29P2-201ENST00000479278 136 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 RPL30P5-201ENST00000494923 336 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 SCARNA15.2-201ENST00000516409 127 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 AC068339.1-201ENST00000526965 141 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 AC022254.1-201ENST00000567857 235 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 AC007229.1-201ENST00000590455 412 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 AC024220.1-201ENST00000603675 484 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 AC116447.1-201ENST00000613153 453 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 CR392039.5-201ENST00000623201 510 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 BMS1P21-201ENST00000634565 365 ntBASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.31□□□□□ -1.72
NPAS3Q8IXF0 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 MIR518D-201ENST00000385014 87 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 RNA5SP146-201ENST00000410743 123 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 AF228730.3-201ENST00000436691 102 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 GEMIN8P3-201ENST00000445417 720 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 RPL26P9-201ENST00000457466 433 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 COX6CP6-201ENST00000490840 228 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 RNU6-904P-201ENST00000516206 101 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 SNORA31.8-201ENST00000516327 108 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 AC100770.1-201ENST00000532310 322 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 AC107918.3-201ENST00000533272 382 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 AC025281.1-201ENST00000567026 265 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 AC012442.3-202ENST00000636742 206 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 MIR4662A-201ENST00000637499 67 ntBASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
NPAS3Q8IXF0 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 Y_RNA.93-201ENST00000363066 109 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 MIR891A-201ENST00000401237 79 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 RN7SKP167-201ENST00000411047 285 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 GOT2P5-201ENST00000433995 546 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 AC006011.1-201ENST00000442758 349 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 NDUFS5P3-201ENST00000450668 321 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 AC090525.1-201ENST00000479116 478 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 RPL23AP54-201ENST00000495129 419 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 SNORA70.12-201ENST00000516084 153 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 IGKV3-31-201ENST00000523109 329 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 AL121603.1-201ENST00000553815 142 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
NPAS3Q8IXF0 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 MIR208A-201ENST00000362287 71 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 RNA5SP124-201ENST00000362739 110 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 RNA5SP22-201ENST00000365393 109 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 Y_RNA.366-201ENST00000365540 102 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 RNU6-24P-201ENST00000384440 107 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 MIR200C-201ENST00000384980 68 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 RPL21P3-201ENST00000395517 478 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 MIR889-201ENST00000401280 79 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 AC019288.1-201ENST00000557918 224 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 AL356575.1-201ENST00000603008 283 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 AL137067.1-201ENST00000615933 120 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 MIR3529-201ENST00000637713 78 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 AC007256.1-201ENST00000392253 2765 ntBASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
NPAS3Q8IXF0 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 Y_RNA.634-201ENST00000364811 113 ntBASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 Y_RNA.290-201ENST00000364879 114 ntBASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 RNU6-837P-201ENST00000391056 108 ntBASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 RN7SKP101-201ENST00000411376 320 ntBASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 AC007064.1-201ENST00000412238 351 ntBASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 SNRPEP9-201ENST00000436794 238 ntBASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC4.27□□□□□ -1.73
NPAS3Q8IXF0 RNU6-437P-201ENST00000459408 95 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms