Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL359672.1-201ENST00000442302 409 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 HMGN2P26-201ENST00000463169 339 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 AC016632.1-201ENST00000503994 196 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 Y_RNA.655-201ENST00000515919 96 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 RNU6-1332P-201ENST00000516666 104 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 RNU6-612P-201ENST00000516909 102 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 TRAV32-201ENST00000553993 340 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 SNRPGP17-201ENST00000603780 214 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 AL356157.2-201ENST00000605122 111 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 FAM157A-202ENST00000615155 405 ntBASIC1.69□□□□□ -2.14
SKA3Q8IX90 ZNF355P-201ENST00000427301 3216 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.68□□□□□ -2.14
SKA3Q8IX90 RNA5SP276-201ENST00000362580 94 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 SNORD114-1-201ENST00000362705 72 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 SNORD115-3-201ENST00000363100 82 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 RNU4-56P-201ENST00000364700 142 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 RNU6-142P-201ENST00000384019 107 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 SNORA36A-201ENST00000384221 132 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 RNU6-611P-201ENST00000384276 104 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 SNORA26.3-201ENST00000391119 136 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 BTF3L4P2-201ENST00000392798 346 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 EIF1AXP1-201ENST00000419267 435 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 HMGN2P19-201ENST00000425149 265 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 AC078809.1-201ENST00000427601 140 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 MTND3P9-201ENST00000429526 346 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 AL133396.1-201ENST00000432048 687 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.68□□□□□ -2.14
SKA3Q8IX90 AL137159.1-201ENST00000452808 512 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 AC091435.1-201ENST00000505442 584 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.68□□□□□ -2.14
SKA3Q8IX90 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.68□□□□□ -2.14
SKA3Q8IX90 MTND1P35-201ENST00000526739 508 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.68□□□□□ -2.14
SKA3Q8IX90 AC007375.1-201ENST00000554513 578 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 MIR4529-201ENST00000578110 78 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.68□□□□□ -2.14
SKA3Q8IX90 AC078795.3-201ENST00000602913 472 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 AL078605.1-201ENST00000603529 500 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 AL132822.1-201ENST00000617063 513 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.68□□□□□ -2.14
SKA3Q8IX90 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.68□□□□□ -2.14
SKA3Q8IX90 SNORA43.4-201ENST00000629559 138 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 AC009541.1-201ENST00000438279 2662 ntBASIC1.68□□□□□ -2.14
SKA3Q8IX90 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
SKA3Q8IX90 AC121333.1-201ENST00000567488 2709 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
SKA3Q8IX90 Y_RNA.9-201ENST00000362354 101 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 RNU6-1317P-201ENST00000364582 104 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 RNU4-12P-201ENST00000365233 139 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 Y_RNA.402-201ENST00000383972 102 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 RNU6-1215P-201ENST00000384441 102 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 Y_RNA.554-201ENST00000384672 102 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 AC019129.1-201ENST00000403786 261 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 OOSP1P1-201ENST00000423265 274 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.67□□□□□ -2.14
SKA3Q8IX90 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.67□□□□□ -2.14
SKA3Q8IX90 CBX3P6-201ENST00000430257 527 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 PRELID3BP1-201ENST00000457142 540 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 U8.21-201ENST00000459536 136 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 RNU6-1037P-201ENST00000459571 107 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 AC021231.3-201ENST00000558497 370 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.67□□□□□ -2.14
SKA3Q8IX90 CTHRC1P1-201ENST00000605383 469 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 RMST_3.1-201ENST00000611651 109 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 ZNF702P-202ENST00000434269 1966 ntBASIC1.67□□□□□ -2.14
SKA3Q8IX90 RNU6-227P-201ENST00000362865 103 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 SNORD32B-201ENST00000364460 84 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 RNU6-214P-201ENST00000384130 107 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 SNORD14D-201ENST00000384390 87 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 MIR1262-201ENST00000408276 93 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 MIR1294-201ENST00000408503 142 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 Y_RNA.615-201ENST00000410769 117 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.66□□□□□ -2.14
SKA3Q8IX90 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.66□□□□□ -2.14
SKA3Q8IX90 RPL23AP42-201ENST00000471152 471 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 UBL5P3-201ENST00000475112 231 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.66□□□□□ -2.14
SKA3Q8IX90 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC1.66□□□□□ -2.14
SKA3Q8IX90 MIR449C-201ENST00000516047 92 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 RNU6-991P-201ENST00000516168 107 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 SCOCP1-201ENST00000554676 349 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 ZNF519P2-201ENST00000557032 169 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 AC078899.2-201ENST00000595282 212 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.66□□□□□ -2.14
SKA3Q8IX90 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.66□□□□□ -2.14
SKA3Q8IX90 Z98751.3-201ENST00000604447 521 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 AC104458.1-201ENST00000608243 463 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.66□□□□□ -2.14
SKA3Q8IX90 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.66□□□□□ -2.14
SKA3Q8IX90 MIR1248-201ENST00000629190 106 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 AL450472.1-202ENST00000637286 180 ntBASIC1.66□□□□□ -2.14
SKA3Q8IX90 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.66□□□□□ -2.14
SKA3Q8IX90 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.14
SKA3Q8IX90 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.65□□□□□ -2.15
SKA3Q8IX90 RNU6-1159P-201ENST00000362933 107 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 RNU6-1252P-201ENST00000363054 104 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 Y_RNA.373-201ENST00000365600 103 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 Y_RNA.450-201ENST00000384198 113 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 MIR518A2-201ENST00000384966 87 ntBASIC1.65□□□□□ -2.15
SKA3Q8IX90 RNA5SP201-201ENST00000410316 124 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 226.3 ms