Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC010297.1-201ENST00000623948 149 ntBASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.67□□□□□ -1.98
CCDC28AQ8IWP9 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 RNA5SP125-201ENST00000364843 120 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 SNORA33.2-201ENST00000365413 134 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 AC096644.2-201ENST00000429278 159 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 AC112220.1-201ENST00000434628 355 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 AC096638.1-201ENST00000444678 216 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 RPS29P2-201ENST00000479278 136 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 SNORA40.14-201ENST00000516543 86 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 UBL5P4-201ENST00000562584 236 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 MIR5695-201ENST00000579717 85 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 VN1R85P-201ENST00000601587 426 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 AC018692.3-201ENST00000623929 123 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 AC005592.1-201ENST00000566527 1640 ntBASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.66□□□□□ -1.98
CCDC28AQ8IWP9 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 Y_RNA.80-201ENST00000362996 102 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-873P-201ENST00000363833 107 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 Y_RNA.422-201ENST00000384054 114 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 MTCO3P19-201ENST00000415864 321 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 EIF1P2-201ENST00000428233 350 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 AC027124.2-201ENST00000428249 105 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 WARS2P1-201ENST00000429678 537 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 AL160004.2-201ENST00000432935 350 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 CHEK2P4-201ENST00000450340 246 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 AL133162.1-201ENST00000463228 453 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 RN7SL297P-201ENST00000483161 293 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 AC107032.1-201ENST00000485945 480 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 FCF1P8-201ENST00000510322 597 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 AC107016.2-201ENST00000547968 190 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 HSBP1P1-201ENST00000555205 166 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 SNORD58B-201ENST00000607313 66 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 MIR7851-201ENST00000610611 160 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 TCL6_2.1-201ENST00000615162 119 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 AC005296.1-201ENST00000616145 209 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 AL132822.1-201ENST00000617063 513 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 AC068724.3-201ENST00000625906 87 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 FO624990.1-201ENST00000636373 85 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 AC099654.10-201ENST00000640395 161 ntBASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC2.65□□□□□ -1.99
CCDC28AQ8IWP9 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 SNORA25.6-201ENST00000364121 118 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AL359837.1-201ENST00000381357 287 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 SNORA18.2-201ENST00000383865 132 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-26P-201ENST00000383985 107 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-546P-201ENST00000383991 107 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 MIR561-201ENST00000385216 97 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 RNA5SP213-201ENST00000391031 106 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 MRPL42P3-201ENST00000401492 326 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AL451074.5-201ENST00000415894 435 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 YME1L1P1-201ENST00000429435 297 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AC091390.1-201ENST00000433904 331 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 U8.22-201ENST00000459141 133 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AC074250.1-201ENST00000511117 192 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 SNORA25.14-201ENST00000516481 132 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AC022868.1-201ENST00000517767 391 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AC087499.8-201ENST00000578406 226 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 MIR4446-201ENST00000578505 67 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AL049779.4-201ENST00000604500 156 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AC040896.1-201ENST00000613819 479 ntBASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.64□□□□□ -1.99
CCDC28AQ8IWP9 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 RNU1-23P-201ENST00000363361 144 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-639P-201ENST00000384074 107 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 Y_RNA.526-201ENST00000384572 110 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 MIR549A-201ENST00000385268 96 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 RNU2-32P-201ENST00000411193 191 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 AL445305.1-201ENST00000432577 575 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 AC004386.2-201ENST00000441858 148 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 AC112492.4-201ENST00000456549 352 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 SNORD105B-201ENST00000458770 79 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 RN7SKP18-201ENST00000516005 275 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms