Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC113410.1-201ENST00000505029 247 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 RNY4P37-201ENST00000516225 96 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 RNU6-677P-201ENST00000516914 101 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.32□□□□□ -2.36
USP54Q70EL1 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.32□□□□□ -2.36
USP54Q70EL1 MIR5589-201ENST00000579442 60 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 MIR5190-201ENST00000581537 80 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 VN1R87P-201ENST00000596706 487 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 AL513534.2-201ENST00000603836 250 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 AC092574.1-201ENST00000609771 420 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 AC068647.2-201ENST00000637380 353 ntBASIC0.32□□□□□ -2.36
USP54Q70EL1 RNU6-960P-201ENST00000364056 120 ntBASIC0.31□□□□□ -2.36
USP54Q70EL1 RNU6-331P-201ENST00000384724 107 ntBASIC0.31□□□□□ -2.36
USP54Q70EL1 RPL17P35-201ENST00000432217 549 ntBASIC0.31□□□□□ -2.36
USP54Q70EL1 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC0.31□□□□□ -2.36
USP54Q70EL1 RPL39P38-201ENST00000467018 153 ntBASIC0.31□□□□□ -2.36
USP54Q70EL1 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.31□□□□□ -2.36
USP54Q70EL1 RNU2-10P-201ENST00000516375 211 ntBASIC0.31□□□□□ -2.36
USP54Q70EL1 MIR4709-201ENST00000577272 72 ntBASIC0.31□□□□□ -2.36
USP54Q70EL1 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC0.31□□□□□ -2.36
USP54Q70EL1 AC104465.1-201ENST00000611365 139 ntBASIC0.31□□□□□ -2.36
USP54Q70EL1 AC008147.4-201ENST00000617570 1204 ntBASIC0.31□□□□□ -2.36
USP54Q70EL1 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
USP54Q70EL1 RNU4-15P-201ENST00000362613 141 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 Y_RNA.518-201ENST00000384552 113 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.3□□□□□ -2.36
USP54Q70EL1 RNA5SP25-201ENST00000410815 110 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 MTND4P20-201ENST00000424125 869 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.3□□□□□ -2.36
USP54Q70EL1 AC245047.7-201ENST00000440265 293 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC0.3□□□□□ -2.36
USP54Q70EL1 AL162395.1-201ENST00000457882 422 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 RPS23P5-201ENST00000495419 428 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 MTCO3P9-201ENST00000506989 781 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.3□□□□□ -2.36
USP54Q70EL1 RNU6-751P-201ENST00000516382 101 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 SNORD60.2-201ENST00000516883 86 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 AC016256.1-201ENST00000547971 354 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC0.3□□□□□ -2.36
USP54Q70EL1 AC105148.1-201ENST00000604961 409 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 RNU6-88P-201ENST00000606801 100 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.3□□□□□ -2.36
USP54Q70EL1 AL359547.2-201ENST00000615810 418 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC0.3□□□□□ -2.36
USP54Q70EL1 SNORD12-201ENST00000391002 90 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 RN7SKP266-201ENST00000410232 287 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 RPS3AP37-201ENST00000419176 745 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.3□□□□□ -2.36
USP54Q70EL1 AC007969.2-201ENST00000441891 191 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.3□□□□□ -2.36
USP54Q70EL1 MTCO1P27-201ENST00000448269 226 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC0.3□□□□□ -2.36
USP54Q70EL1 SNORA31.2-201ENST00000516019 134 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 AP001893.2-201ENST00000526949 202 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC0.3□□□□□ -2.36
USP54Q70EL1 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC0.3□□□□□ -2.36
USP54Q70EL1 AC087883.1-201ENST00000551882 391 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.3□□□□□ -2.36
USP54Q70EL1 MTCYBP33-201ENST00000575007 1130 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 MIR3136-201ENST00000583498 78 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 AC023158.2-201ENST00000614876 543 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 AC006927.2-201ENST00000639256 389 ntBASIC0.3□□□□□ -2.36
USP54Q70EL1 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.3□□□□□ -2.36
USP54Q70EL1 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.29□□□□□ -2.36
USP54Q70EL1 AC023934.1-201ENST00000574529 2389 ntBASIC0.29□□□□□ -2.36
USP54Q70EL1 MIR340-201ENST00000362125 95 ntBASIC0.29□□□□□ -2.36
USP54Q70EL1 RNU6-1123P-201ENST00000362347 106 ntBASIC0.29□□□□□ -2.36
USP54Q70EL1 Y_RNA.60-201ENST00000362831 98 ntBASIC0.29□□□□□ -2.36
USP54Q70EL1 SNORA80D-201ENST00000384488 135 ntBASIC0.29□□□□□ -2.36
USP54Q70EL1 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.29□□□□□ -2.36
USP54Q70EL1 RPS25P9-201ENST00000435591 252 ntBASIC0.29□□□□□ -2.36
USP54Q70EL1 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.29□□□□□ -2.36
USP54Q70EL1 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC0.29□□□□□ -2.36
USP54Q70EL1 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.29□□□□□ -2.36
USP54Q70EL1 Y_RNA.687-201ENST00000516558 91 ntBASIC0.29□□□□□ -2.36
USP54Q70EL1 AC025627.3-201ENST00000582078 182 ntBASIC0.29□□□□□ -2.36
USP54Q70EL1 GHRLOS.1-201ENST00000610995 70 ntBASIC0.29□□□□□ -2.36
USP54Q70EL1 AC021506.2-201ENST00000612354 169 ntBASIC0.29□□□□□ -2.36
USP54Q70EL1 AC040896.1-201ENST00000613819 479 ntBASIC0.29□□□□□ -2.36
USP54Q70EL1 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC0.29□□□□□ -2.36
USP54Q70EL1 RNU5B-4P-201ENST00000363508 111 ntBASIC0.28□□□□□ -2.36
USP54Q70EL1 RNU4-56P-201ENST00000364700 142 ntBASIC0.28□□□□□ -2.36
USP54Q70EL1 RNU6-468P-201ENST00000384003 109 ntBASIC0.28□□□□□ -2.36
USP54Q70EL1 RNU6-1237P-201ENST00000384777 107 ntBASIC0.28□□□□□ -2.36
USP54Q70EL1 SNORA12.2-201ENST00000391040 156 ntBASIC0.28□□□□□ -2.36
USP54Q70EL1 RPS3AP36-201ENST00000398190 775 ntBASIC0.28□□□□□ -2.36
USP54Q70EL1 ELOCP17-201ENST00000414751 326 ntBASIC0.28□□□□□ -2.36
USP54Q70EL1 USP9YP14-201ENST00000430663 563 ntBASIC0.28□□□□□ -2.36
USP54Q70EL1 AC002486.1-201ENST00000435098 391 ntBASIC0.28□□□□□ -2.36
USP54Q70EL1 AL606662.1-201ENST00000445763 553 ntBASIC0.28□□□□□ -2.36
USP54Q70EL1 MTND2P3-201ENST00000452458 470 ntBASIC0.28□□□□□ -2.36
USP54Q70EL1 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC0.28□□□□□ -2.36
USP54Q70EL1 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC0.28□□□□□ -2.36
USP54Q70EL1 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC0.28□□□□□ -2.36
USP54Q70EL1 Y_RNA.124-201ENST00000363339 93 ntBASIC0.27□□□□□ -2.37
USP54Q70EL1 RNU6-777P-201ENST00000364265 104 ntBASIC0.27□□□□□ -2.37
USP54Q70EL1 SNORD32B-201ENST00000364460 84 ntBASIC0.27□□□□□ -2.37
USP54Q70EL1 RNY3P13-201ENST00000365542 102 ntBASIC0.27□□□□□ -2.37
USP54Q70EL1 RNU6-946P-201ENST00000383878 107 ntBASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms