Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC136475.10-201ENST00000620253 385 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 AC092634.7-201ENST00000621022 103 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.06□□□□□ -2.4
CHD9Q3L8U1 U6.99-201ENST00000637524 83 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 RNU6-862P-201ENST00000362804 105 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 RNU5E-7P-201ENST00000365290 117 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 RNU6-796P-201ENST00000391086 107 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 AC068533.2-201ENST00000411872 306 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 BX119904.4-201ENST00000424402 301 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC0.06□□□□□ -2.4
CHD9Q3L8U1 EEF1E1P1-201ENST00000446998 430 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 AC003071.1-201ENST00000451219 789 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 MTND1P9-201ENST00000453775 944 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC0.06□□□□□ -2.4
CHD9Q3L8U1 Y_RNA.684-201ENST00000516510 99 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 RNU6-551P-201ENST00000516661 103 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 RNU6-197P-201ENST00000516680 100 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.06□□□□□ -2.4
CHD9Q3L8U1 AC025627.3-201ENST00000582078 182 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 AC105129.3-201ENST00000605455 485 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 AC021506.2-201ENST00000612354 169 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 AC090517.2-201ENST00000614966 680 ntBASIC0.06□□□□□ -2.4
CHD9Q3L8U1 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.06□□□□□ -2.4
CHD9Q3L8U1 SNORD114-24-201ENST00000365029 72 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 RNU6-302P-201ENST00000365249 107 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 SNORA36.2-201ENST00000384004 127 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 SNORD116-13-201ENST00000384408 92 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC0.05□□□□□ -2.4
CHD9Q3L8U1 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC0.05□□□□□ -2.4
CHD9Q3L8U1 MTCO2P18-201ENST00000457151 658 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.05□□□□□ -2.4
CHD9Q3L8U1 RNA5SP481-201ENST00000516814 122 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 SUMO2P18-201ENST00000518873 252 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 AC109446.1-201ENST00000566172 220 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 AL590229.1-201ENST00000603497 542 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 AC090948.3-201ENST00000606713 551 ntTSL 4 BASIC0.05□□□□□ -2.4
CHD9Q3L8U1 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.05□□□□□ -2.4
CHD9Q3L8U1 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC0.05□□□□□ -2.4
CHD9Q3L8U1 MIR371B-201ENST00000638082 66 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 RNU4-48P-201ENST00000365559 182 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 SNORA29-201ENST00000384183 140 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 Y_RNA.498-201ENST00000384460 102 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 RNU2-3P-201ENST00000410144 191 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 RPS3AP1-201ENST00000413190 320 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC0.05□□□□□ -2.4
CHD9Q3L8U1 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.05□□□□□ -2.4
CHD9Q3L8U1 RNU7-21P-201ENST00000459430 62 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC0.05□□□□□ -2.4
CHD9Q3L8U1 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC0.05□□□□□ -2.4
CHD9Q3L8U1 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.05□□□□□ -2.4
CHD9Q3L8U1 MIR4764-201ENST00000580680 88 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 AC007363.1-201ENST00000604736 620 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 RNU6-87P-201ENST00000607561 108 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 MIR1264-201ENST00000616374 69 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 AL356094.1-201ENST00000624663 1212 ntBASIC0.05□□□□□ -2.4
CHD9Q3L8U1 RNU6-119P-201ENST00000364882 107 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 Y_RNA.293-201ENST00000364908 93 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 MTCYBP40-201ENST00000509390 1135 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AC024589.1-201ENST00000512207 263 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 RNU5F-2P-201ENST00000516066 82 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 SNORD79.1-201ENST00000516069 84 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 RNU5F-4P-201ENST00000516581 114 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 RNU6-922P-201ENST00000516753 99 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 SCARNA16.5-201ENST00000517114 183 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 DEFB108A-201ENST00000530110 222 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 MIR1273C-201ENST00000578669 77 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 BNIP3P30-201ENST00000601184 574 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 BNIP3P9-201ENST00000603714 553 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 GHRLOS.1-201ENST00000610995 70 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AC112487.2-201ENST00000637950 304 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 MIR653-201ENST00000385279 96 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 Y_RNA.623-201ENST00000411128 95 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AC116347.2-201ENST00000514912 523 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 MIR5695-201ENST00000579717 85 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AC022022.2-201ENST00000602989 360 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AC098483.2-201ENST00000603158 454 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AC090625.1-201ENST00000357130 210 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 MIR411-201ENST00000362239 96 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 RNU6-743P-201ENST00000364151 106 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 RNY4P7-201ENST00000364600 96 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 RNU6-744P-201ENST00000365557 107 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 RNU6-1316P-201ENST00000384242 108 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 MT-TQ-201ENST00000387372 72 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 RNU6-1176P-201ENST00000390955 107 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC0.04□□□□□ -2.4
CHD9Q3L8U1 ZFAND6P1-201ENST00000434138 605 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 AC108740.1-201ENST00000498629 225 ntBASIC0.04□□□□□ -2.4
CHD9Q3L8U1 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms