Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SF3A1Q15459 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
SF3A1Q15459 AC093010.3-201ENST00000570269 15214 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 Y_RNA.39-201ENST00000362620 98 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 Y_RNA.132-201ENST00000363421 102 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 SNORA46-201ENST00000384762 135 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 U3.19-201ENST00000390893 196 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 RPL21P3-201ENST00000395517 478 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 AL031121.1-201ENST00000406553 254 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 MIR320B2-201ENST00000408479 138 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.6□□□□□ -1.83
SF3A1Q15459 AC114482.1-201ENST00000418010 247 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.6□□□□□ -1.83
SF3A1Q15459 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.6□□□□□ -1.83
SF3A1Q15459 AC083906.5-201ENST00000503722 328 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 RNU6-988P-201ENST00000519081 107 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.6□□□□□ -1.83
SF3A1Q15459 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.6□□□□□ -1.83
SF3A1Q15459 AC083806.3-201ENST00000614016 455 ntBASIC3.6□□□□□ -1.83
SF3A1Q15459 Y_RNA.216-201ENST00000364205 93 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 RNU4-42P-201ENST00000364738 142 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 RNY1P14-201ENST00000384426 108 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.59□□□□□ -1.83
SF3A1Q15459 PMCHL1-202ENST00000423102 261 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 UQCRHP3-201ENST00000451503 251 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.59□□□□□ -1.83
SF3A1Q15459 RN7SL807P-201ENST00000470923 297 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 RNA5SP54-201ENST00000516951 92 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 RNU6-58P-201ENST00000517143 103 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 AC091144.1-201ENST00000519573 138 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.59□□□□□ -1.83
SF3A1Q15459 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.59□□□□□ -1.83
SF3A1Q15459 UBL5P4-201ENST00000562584 236 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.59□□□□□ -1.83
SF3A1Q15459 MIR5695-201ENST00000579717 85 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 AC018692.3-201ENST00000623929 123 ntBASIC3.59□□□□□ -1.83
SF3A1Q15459 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.59□□□□□ -1.83
SF3A1Q15459 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
SF3A1Q15459 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SF3A1Q15459 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
SF3A1Q15459 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SF3A1Q15459 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
SF3A1Q15459 MIR1294-201ENST00000408503 142 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 MCFD2P1-201ENST00000417812 300 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 AC003685.2-201ENST00000422795 395 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 AC027124.2-201ENST00000428249 105 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.58□□□□□ -1.84
SF3A1Q15459 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.58□□□□□ -1.84
SF3A1Q15459 SNORA59A-201ENST00000459326 152 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.58□□□□□ -1.84
SF3A1Q15459 AC110794.1-201ENST00000505816 425 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.58□□□□□ -1.84
SF3A1Q15459 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.58□□□□□ -1.84
SF3A1Q15459 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 RNU6-965P-201ENST00000516721 96 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 Y_RNA.711-201ENST00000516993 102 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.58□□□□□ -1.84
SF3A1Q15459 CBX3P7-201ENST00000532876 502 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 AC090617.3-201ENST00000573670 475 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 MIR4506-201ENST00000584693 77 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 AC087588.2-201ENST00000617667 426 ntBASIC3.58□□□□□ -1.84
SF3A1Q15459 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.58□□□□□ -1.84
SF3A1Q15459 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC3.58□□□□□ -1.84
SF3A1Q15459 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SF3A1Q15459 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
SF3A1Q15459 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
SF3A1Q15459 FTX-214ENST00000638437 12267 ntTSL 5 BASIC3.57□□□□□ -1.84
SF3A1Q15459 RNU1-115P-201ENST00000365329 160 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 XGY1-201ENST00000381172 446 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
SF3A1Q15459 RNA5SP120-201ENST00000410900 112 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 RNU2-25P-201ENST00000411041 191 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 WARS2P1-201ENST00000429678 537 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 MTCYBP6-201ENST00000441810 138 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.57□□□□□ -1.84
SF3A1Q15459 RN7SL75P-201ENST00000461926 281 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 AL163540.1-201ENST00000485382 386 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 RNU6-1114P-201ENST00000516022 107 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 MIR449C-201ENST00000516047 92 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 SNORA48.11-201ENST00000517015 89 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 AC022868.1-201ENST00000517767 391 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 AC023442.1-201ENST00000531247 422 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 AP003072.1-201ENST00000531740 145 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 ELOCP31-201ENST00000540463 467 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 AC023824.2-201ENST00000566185 400 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 AC006600.1-201ENST00000572529 153 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 SNRPGP20-201ENST00000604477 205 ntBASIC3.57□□□□□ -1.84
SF3A1Q15459 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
SF3A1Q15459 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
SF3A1Q15459 Y_RNA.28-201ENST00000362554 111 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 RNU1-23P-201ENST00000363361 144 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 SNORA38.1-201ENST00000364172 131 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 SNORD32B-201ENST00000364460 84 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 SNORA18.2-201ENST00000383865 132 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 SNORA22B-201ENST00000383876 138 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
SF3A1Q15459 SNORA48.2-201ENST00000390926 124 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 Y_RNA.592-201ENST00000410274 109 ntBASIC3.56□□□□□ -1.84
SF3A1Q15459 RNU2-32P-201ENST00000411193 191 ntBASIC3.56□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms