Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RPS29P20-201ENST00000489592 171 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 RNU6-436P-201ENST00000516171 114 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 RNU7-121P-201ENST00000516604 62 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 RNA5SP309-201ENST00000516670 106 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 AC100767.1-201ENST00000528178 123 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 AC090897.2-201ENST00000581715 130 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 AL356575.1-201ENST00000603008 283 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 AC006380.1-201ENST00000603598 186 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 AC019176.2-201ENST00000611579 315 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.89□□□□□ -1.79
SOX4Q06945 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SOX4Q06945 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.89□□□□□ -1.79
SOX4Q06945 AL133383.2-201ENST00000622958 2336 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 AC007656.2-201ENST00000624902 4547 ntBASIC3.89□□□□□ -1.79
SOX4Q06945 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
SOX4Q06945 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
SOX4Q06945 RNU1-62P-201ENST00000362599 164 ntBASIC3.88□□□□□ -1.79
SOX4Q06945 Y_RNA.353-201ENST00000365440 108 ntBASIC3.88□□□□□ -1.79
SOX4Q06945 RNU6-622P-201ENST00000384272 103 ntBASIC3.88□□□□□ -1.79
SOX4Q06945 MIR218-2-201ENST00000385006 110 ntBASIC3.88□□□□□ -1.79
SOX4Q06945 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
SOX4Q06945 RNU6-381P-201ENST00000391259 108 ntBASIC3.88□□□□□ -1.79
SOX4Q06945 RNU2-58P-201ENST00000516403 183 ntBASIC3.88□□□□□ -1.79
SOX4Q06945 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX4Q06945 AC021739.1-201ENST00000559631 174 ntBASIC3.88□□□□□ -1.79
SOX4Q06945 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.88□□□□□ -1.79
SOX4Q06945 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SOX4Q06945 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
SOX4Q06945 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.88□□□□□ -1.79
SOX4Q06945 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.88□□□□□ -1.79
SOX4Q06945 CUL1P1-201ENST00000509510 2425 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
SOX4Q06945 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX4Q06945 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX4Q06945 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.87□□□□□ -1.79
SOX4Q06945 RNU6-600P-201ENST00000362524 99 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 RNU6-324P-201ENST00000363957 106 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 SNORD46.1-201ENST00000364139 104 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 RNA5SP387-201ENST00000364226 106 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 RNU6-215P-201ENST00000365169 102 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 U3.40-201ENST00000408706 208 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 VDAC1P3-201ENST00000434069 851 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 AC078817.1-201ENST00000492623 435 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 AC078918.1-201ENST00000498515 228 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.87□□□□□ -1.79
SOX4Q06945 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.87□□□□□ -1.79
SOX4Q06945 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.87□□□□□ -1.79
SOX4Q06945 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.87□□□□□ -1.79
SOX4Q06945 AC090616.3-201ENST00000582184 217 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
SOX4Q06945 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX4Q06945 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX4Q06945 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.87□□□□□ -1.79
SOX4Q06945 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
SOX4Q06945 FAM35BP-202ENST00000497389 3337 ntBASIC3.87□□□□□ -1.79
SOX4Q06945 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SOX4Q06945 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SOX4Q06945 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX4Q06945 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SOX4Q06945 Y_RNA.273-201ENST00000364703 102 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 RNU6-487P-201ENST00000365430 104 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SOX4Q06945 SNORA18.3-201ENST00000384122 132 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 U3.26-201ENST00000391236 204 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 MIR320B2-201ENST00000408479 138 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.86□□□□□ -1.79
SOX4Q06945 RBMY2UP-201ENST00000453474 324 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 AC008155.2-201ENST00000464337 397 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 AC023141.12-201ENST00000512399 199 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 RN7SKP209-201ENST00000516888 304 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 RNU2-12P-201ENST00000517216 168 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 AC115990.1-201ENST00000526957 301 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 DEFB131C-201ENST00000528817 165 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC3.86□□□□□ -1.79
SOX4Q06945 AC021269.2-201ENST00000532318 330 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 AP004242.1-201ENST00000533701 349 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 CYP4A27P-201ENST00000567218 190 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 MIR4431-201ENST00000579990 94 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 SNRPGP20-201ENST00000604477 205 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 U4.6-201ENST00000621618 127 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
SOX4Q06945 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.86□□□□□ -1.79
SOX4Q06945 AC027290.2-201ENST00000623210 18662 ntBASIC3.86□□□□□ -1.79
SOX4Q06945 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
SOX4Q06945 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.86□□□□□ -1.79
SOX4Q06945 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
SOX4Q06945 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
SOX4Q06945 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
SOX4Q06945 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.85□□□□□ -1.79
SOX4Q06945 AC018555.1-201ENST00000567548 1980 ntBASIC3.85□□□□□ -1.79
SOX4Q06945 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SOX4Q06945 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SOX4Q06945 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
SOX4Q06945 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
SOX4Q06945 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
SOX4Q06945 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SOX4Q06945 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SOX4Q06945 RNU6-801P-201ENST00000364087 105 ntBASIC3.85□□□□□ -1.79
SOX4Q06945 MIR607-201ENST00000385241 96 ntBASIC3.85□□□□□ -1.79
SOX4Q06945 EI24P2-201ENST00000397776 1076 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms