Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 MRPS36P4-201ENST00000534436 298 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC0.05□□□□□ -2.4
COL7A1Q02388 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC0.05□□□□□ -2.4
COL7A1Q02388 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC0.05□□□□□ -2.4
COL7A1Q02388 NAMPTP3-201ENST00000569273 224 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 AC131055.1-201ENST00000584626 316 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 BNIP3P31-201ENST00000604515 566 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.05□□□□□ -2.4
COL7A1Q02388 AL583856.2-201ENST00000606298 543 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AL139418.1-201ENST00000613613 177 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AL159153.1-201ENST00000619688 317 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 AC009268.2-201ENST00000621925 457 ntBASIC0.05□□□□□ -2.4
COL7A1Q02388 SNORD44.1-201ENST00000363202 61 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RNU6-216P-201ENST00000363282 104 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 SNORD56.4-201ENST00000363883 71 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RNU4-56P-201ENST00000364700 142 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RNU6-637P-201ENST00000384050 107 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RNU6-481P-201ENST00000384194 107 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 MIR16-1-201ENST00000385271 89 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 MIR653-201ENST00000385279 96 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL161935.2-201ENST00000414627 60 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC0.04□□□□□ -2.4
COL7A1Q02388 AC007435.1-201ENST00000421086 415 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC019178.2-201ENST00000423595 505 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.04□□□□□ -2.4
COL7A1Q02388 SKA2P1-201ENST00000425592 390 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC0.04□□□□□ -2.4
COL7A1Q02388 USP9YP14-201ENST00000430663 563 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC0.04□□□□□ -2.4
COL7A1Q02388 AC099677.2-201ENST00000436385 175 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC0.04□□□□□ -2.4
COL7A1Q02388 AC007000.2-201ENST00000442564 487 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL606517.2-201ENST00000442855 241 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RNU7-21P-201ENST00000459430 62 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RNU7-94P-201ENST00000459576 63 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 TMEM251P1-201ENST00000503717 318 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RPF2P2-201ENST00000504693 896 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC0.04□□□□□ -2.4
COL7A1Q02388 AC010587.2-201ENST00000511727 448 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RPL39P5-202ENST00000512505 151 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RNU5B-3P-201ENST00000516601 115 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 DEFB108A-201ENST00000530110 222 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL121579.1-201ENST00000555129 305 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC015688.6-201ENST00000577737 104 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC0.04□□□□□ -2.4
COL7A1Q02388 AC098483.2-201ENST00000603158 454 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC105129.3-201ENST00000605455 485 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC112220.2-201ENST00000605513 533 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL356094.1-201ENST00000624663 1212 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 MIR4275-201ENST00000636486 87 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL390237.1-201ENST00000404226 1415 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.04□□□□□ -2.4
COL7A1Q02388 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.04□□□□□ -2.4
COL7A1Q02388 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
COL7A1Q02388 Y_RNA.86-201ENST00000363020 111 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 SNORA63D-201ENST00000364359 132 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 Y_RNA.332-201ENST00000365271 113 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RNY3P14-201ENST00000384309 102 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 MIR29B2-201ENST00000385055 81 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RNU6-293P-201ENST00000411259 106 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RNU4-63P-201ENST00000411313 118 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.04□□□□□ -2.4
COL7A1Q02388 MTCYBP38-201ENST00000417160 1123 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.04□□□□□ -2.4
COL7A1Q02388 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC0.04□□□□□ -2.4
COL7A1Q02388 AL512637.2-201ENST00000431287 1256 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC0.04□□□□□ -2.4
COL7A1Q02388 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.04□□□□□ -2.4
COL7A1Q02388 MTATP6P23-201ENST00000440153 476 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC002542.1-201ENST00000440683 193 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC0.04□□□□□ -2.4
COL7A1Q02388 MTCO2P7-201ENST00000446518 666 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL133217.1-201ENST00000450980 425 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.04□□□□□ -2.4
COL7A1Q02388 RPL18AP17-201ENST00000455326 198 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC0.04□□□□□ -2.4
COL7A1Q02388 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC0.04□□□□□ -2.4
COL7A1Q02388 U8.21-201ENST00000459536 136 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RAP1BP2-201ENST00000478270 544 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RPL30P7-201ENST00000479312 323 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC008628.1-201ENST00000508663 265 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC079140.3-201ENST00000511111 550 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 PTP4A1P4-201ENST00000512479 322 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 RNVU1-2-201ENST00000516326 135 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 SCARNA16.5-201ENST00000517114 183 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.04□□□□□ -2.4
COL7A1Q02388 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC0.04□□□□□ -2.4
COL7A1Q02388 AL442163.3-201ENST00000554110 156 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 EIF1AXP2-201ENST00000555940 413 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC109446.1-201ENST00000566172 220 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC122134.1-202ENST00000569111 1201 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC011451.2-201ENST00000604303 598 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC099785.1-201ENST00000605697 437 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AL139022.2-201ENST00000606934 443 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 MIR8084-201ENST00000614105 89 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC0.04□□□□□ -2.4
COL7A1Q02388 AC008147.4-201ENST00000617570 1204 ntBASIC0.04□□□□□ -2.4
COL7A1Q02388 AC092656.1-203ENST00000624134 423 ntBASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms