Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 HIF1AP1-201ENST00000553642 175 ntBASIC1.47□□□□□ -2.17
RFX3P48380 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC1.47□□□□□ -2.17
RFX3P48380 MTATP6P3-201ENST00000581686 676 ntBASIC1.47□□□□□ -2.17
RFX3P48380 AC073648.5-201ENST00000603502 305 ntBASIC1.47□□□□□ -2.17
RFX3P48380 AC107304.1-201ENST00000604229 296 ntBASIC1.47□□□□□ -2.17
RFX3P48380 BX248123.2-201ENST00000606318 124 ntBASIC1.47□□□□□ -2.17
RFX3P48380 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.47□□□□□ -2.17
RFX3P48380 AC022513.1-201ENST00000624512 117 ntBASIC1.47□□□□□ -2.17
RFX3P48380 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC1.47□□□□□ -2.17
RFX3P48380 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.47□□□□□ -2.17
RFX3P48380 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
RFX3P48380 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
RFX3P48380 WWP1P1-201ENST00000466609 2769 ntBASIC1.46□□□□□ -2.18
RFX3P48380 SNORD32A-201ENST00000364805 84 ntBASIC1.46□□□□□ -2.18
RFX3P48380 MIR30A-201ENST00000385092 71 ntBASIC1.46□□□□□ -2.18
RFX3P48380 RNU6-1106P-201ENST00000390845 107 ntBASIC1.46□□□□□ -2.18
RFX3P48380 SNORA26.3-201ENST00000391119 136 ntBASIC1.46□□□□□ -2.18
RFX3P48380 AL590135.1-201ENST00000422215 156 ntBASIC1.46□□□□□ -2.18
RFX3P48380 AC019205.3-201ENST00000424573 156 ntBASIC1.46□□□□□ -2.18
RFX3P48380 VN1R108P-201ENST00000431580 830 ntBASIC1.46□□□□□ -2.18
RFX3P48380 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.46□□□□□ -2.18
RFX3P48380 AC016700.2-201ENST00000446011 156 ntBASIC1.46□□□□□ -2.18
RFX3P48380 AL031274.1-201ENST00000450334 232 ntBASIC1.46□□□□□ -2.18
RFX3P48380 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.46□□□□□ -2.18
RFX3P48380 AC015911.1-201ENST00000495111 156 ntBASIC1.46□□□□□ -2.18
RFX3P48380 AC016632.1-201ENST00000503994 196 ntBASIC1.46□□□□□ -2.18
RFX3P48380 HMGB1P29-201ENST00000505659 499 ntBASIC1.46□□□□□ -2.18
RFX3P48380 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.46□□□□□ -2.18
RFX3P48380 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.46□□□□□ -2.18
RFX3P48380 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.46□□□□□ -2.18
RFX3P48380 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.46□□□□□ -2.18
RFX3P48380 MIR3923-201ENST00000579521 83 ntBASIC1.46□□□□□ -2.18
RFX3P48380 AC130454.1-201ENST00000622948 401 ntBASIC1.46□□□□□ -2.18
RFX3P48380 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.46□□□□□ -2.18
RFX3P48380 ELL2P3-201ENST00000457883 1602 ntBASIC1.46□□□□□ -2.18
RFX3P48380 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
RFX3P48380 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
RFX3P48380 RNU6-26P-201ENST00000383985 107 ntBASIC1.45□□□□□ -2.18
RFX3P48380 AC002486.1-201ENST00000435098 391 ntBASIC1.45□□□□□ -2.18
RFX3P48380 RNU7-180P-201ENST00000459240 63 ntBASIC1.45□□□□□ -2.18
RFX3P48380 AC005908.1-201ENST00000468701 347 ntBASIC1.45□□□□□ -2.18
RFX3P48380 AL163973.1-201ENST00000484753 577 ntBASIC1.45□□□□□ -2.18
RFX3P48380 AC005741.1-201ENST00000511094 432 ntBASIC1.45□□□□□ -2.18
RFX3P48380 AC010486.3-201ENST00000511602 785 ntBASIC1.45□□□□□ -2.18
RFX3P48380 RNU6-567P-201ENST00000516746 107 ntBASIC1.45□□□□□ -2.18
RFX3P48380 SNORA31.17-201ENST00000516953 127 ntBASIC1.45□□□□□ -2.18
RFX3P48380 AC087441.2-201ENST00000529141 262 ntBASIC1.45□□□□□ -2.18
RFX3P48380 HSPE1P4-201ENST00000550617 308 ntBASIC1.45□□□□□ -2.18
RFX3P48380 SUB1P4-201ENST00000566062 339 ntBASIC1.45□□□□□ -2.18
RFX3P48380 MIR3198-2-201ENST00000577868 80 ntBASIC1.45□□□□□ -2.18
RFX3P48380 SNORD53B-201ENST00000577887 78 ntBASIC1.45□□□□□ -2.18
RFX3P48380 AC004223.2-201ENST00000590309 544 ntBASIC1.45□□□□□ -2.18
RFX3P48380 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
RFX3P48380 Y_RNA.140-201ENST00000363474 103 ntBASIC1.44□□□□□ -2.18
RFX3P48380 Y_RNA.332-201ENST00000365271 113 ntBASIC1.44□□□□□ -2.18
RFX3P48380 RNU6-827P-201ENST00000365553 106 ntBASIC1.44□□□□□ -2.18
RFX3P48380 MIR1323-201ENST00000408090 73 ntBASIC1.44□□□□□ -2.18
RFX3P48380 MIR1304-201ENST00000408243 91 ntBASIC1.44□□□□□ -2.18
RFX3P48380 RNA5SP201-201ENST00000410316 124 ntBASIC1.44□□□□□ -2.18
RFX3P48380 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.44□□□□□ -2.18
RFX3P48380 AL358453.1-201ENST00000422522 250 ntBASIC1.44□□□□□ -2.18
RFX3P48380 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.44□□□□□ -2.18
RFX3P48380 AC073415.1-201ENST00000449240 153 ntBASIC1.44□□□□□ -2.18
RFX3P48380 MTCO2P18-201ENST00000457151 658 ntBASIC1.44□□□□□ -2.18
RFX3P48380 AC130509.1-201ENST00000464158 433 ntBASIC1.44□□□□□ -2.18
RFX3P48380 SNRPGP7-201ENST00000469016 106 ntBASIC1.44□□□□□ -2.18
RFX3P48380 RPS3AP17-201ENST00000472594 777 ntBASIC1.44□□□□□ -2.18
RFX3P48380 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.44□□□□□ -2.18
RFX3P48380 AC096745.1-201ENST00000509945 370 ntBASIC1.44□□□□□ -2.18
RFX3P48380 RNA5SP490-201ENST00000517141 136 ntBASIC1.44□□□□□ -2.18
RFX3P48380 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.44□□□□□ -2.18
RFX3P48380 MTND4P7-201ENST00000523876 130 ntBASIC1.44□□□□□ -2.18
RFX3P48380 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.44□□□□□ -2.18
RFX3P48380 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.44□□□□□ -2.18
RFX3P48380 AC090115.3-201ENST00000553218 849 ntBASIC1.44□□□□□ -2.18
RFX3P48380 AC015720.1-201ENST00000565251 277 ntBASIC1.44□□□□□ -2.18
RFX3P48380 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.44□□□□□ -2.18
RFX3P48380 AC012507.3-201ENST00000603556 477 ntBASIC1.44□□□□□ -2.18
RFX3P48380 AL391646.1-201ENST00000603860 190 ntBASIC1.44□□□□□ -2.18
RFX3P48380 AP001836.1-201ENST00000604675 523 ntBASIC1.44□□□□□ -2.18
RFX3P48380 RPL17P51-201ENST00000605218 238 ntBASIC1.44□□□□□ -2.18
RFX3P48380 uc_338.34-201ENST00000617467 174 ntBASIC1.44□□□□□ -2.18
RFX3P48380 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
RFX3P48380 Y_RNA.553-201ENST00000384670 102 ntBASIC1.43□□□□□ -2.18
RFX3P48380 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC1.43□□□□□ -2.18
RFX3P48380 MTCYBP8-201ENST00000422855 651 ntBASIC1.43□□□□□ -2.18
RFX3P48380 MTCO2P19-201ENST00000427513 598 ntBASIC1.43□□□□□ -2.18
RFX3P48380 MTCO2P3-201ENST00000442543 421 ntBASIC1.43□□□□□ -2.18
RFX3P48380 RNU1-131P-201ENST00000458943 161 ntBASIC1.43□□□□□ -2.18
RFX3P48380 RNU7-138P-201ENST00000459479 64 ntBASIC1.43□□□□□ -2.18
RFX3P48380 FAM206BP-201ENST00000510179 541 ntBASIC1.43□□□□□ -2.18
RFX3P48380 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.43□□□□□ -2.18
RFX3P48380 SNORA44.1-201ENST00000517031 108 ntBASIC1.43□□□□□ -2.18
RFX3P48380 AC026407.1-201ENST00000518369 204 ntBASIC1.43□□□□□ -2.18
RFX3P48380 AP003034.1-201ENST00000534621 422 ntBASIC1.43□□□□□ -2.18
RFX3P48380 AC103996.1-201ENST00000555468 102 ntBASIC1.43□□□□□ -2.18
RFX3P48380 AC021231.3-201ENST00000558497 370 ntBASIC1.43□□□□□ -2.18
RFX3P48380 MTND3P12-201ENST00000559068 328 ntBASIC1.43□□□□□ -2.18
RFX3P48380 AL158211.1-201ENST00000566763 763 ntBASIC1.43□□□□□ -2.18
RFX3P48380 MIR4498-201ENST00000577599 66 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms