Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RNU5B-2P-201ENST00000363036 113 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 Y_RNA.473-201ENST00000384333 102 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 Y_RNA.504-201ENST00000384481 104 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 AC008267.5-201ENST00000424928 265 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 RPL30P4-201ENST00000429309 333 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 RPS12P2-201ENST00000439728 269 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.62□□□□□ -1.99
PTPN9P43378 UBE2V1P7-201ENST00000446395 340 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 MTCO3P10-201ENST00000455912 772 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 RPL30P10-201ENST00000488148 337 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 HMGB1P35-201ENST00000503360 598 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 RNA5SP320-201ENST00000516263 124 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 RNA5SP384-201ENST00000516615 116 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 RPPH1-2P-201ENST00000516688 293 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 RNU6-1213P-201ENST00000517075 94 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.62□□□□□ -1.99
PTPN9P43378 AC105245.1-201ENST00000581934 244 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 AC069294.1-201ENST00000608397 350 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 AC137590.2-201ENST00000619709 240 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.62□□□□□ -1.99
PTPN9P43378 AC006026.1-201ENST00000444025 1803 ntBASIC2.62□□□□□ -1.99
PTPN9P43378 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.61□□□□□ -1.99
PTPN9P43378 Y_RNA.111-201ENST00000363248 100 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 Y_RNA.146-201ENST00000363549 102 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 RNU6-461P-201ENST00000364195 107 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 RNU4-56P-201ENST00000364700 142 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 RNU6-1180P-201ENST00000364935 107 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 RNU4-9P-201ENST00000364951 139 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 SET-203ENST00000372688 801 ntTSL 2 BASIC2.61□□□□□ -1.99
PTPN9P43378 MIR196B-201ENST00000384852 84 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 MTCYBP2-201ENST00000407745 171 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 RPS26P42-201ENST00000413485 326 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 AL358453.1-201ENST00000422522 250 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.61□□□□□ -1.99
PTPN9P43378 RPS3P1-201ENST00000456781 192 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 RPL30P15-201ENST00000457129 321 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 RN7SKP210-201ENST00000459176 261 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 FO393415.2-201ENST00000480085 343 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 RNU6-1170P-201ENST00000515974 106 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 SCARNA16.2-201ENST00000516520 172 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 MIR5701-3-201ENST00000578890 82 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 MIR5701-1-201ENST00000585138 82 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 AL158827.2-201ENST00000602494 330 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 AL356575.1-201ENST00000603008 283 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 AL034555.1-201ENST00000604816 211 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 MIR5701-2-201ENST00000615634 82 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 HMGB1P24-202ENST00000615653 685 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 AL449363.1-201ENST00000617815 186 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 AL691447.3-201ENST00000635020 330 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 SNORD98-201ENST00000636377 67 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PTPN9P43378 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
PTPN9P43378 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.61□□□□□ -1.99
PTPN9P43378 MTND4P27-201ENST00000450813 1354 ntBASIC2.61□□□□□ -1.99
PTPN9P43378 RNA5SP393-201ENST00000363423 117 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 SNORD115-32-201ENST00000364079 82 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 RNU6-1040P-201ENST00000383974 107 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 RNU6-890P-201ENST00000384121 107 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 SNORA29-201ENST00000384183 140 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 Y_RNA.533-201ENST00000384596 114 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 MIR518C-201ENST00000384822 101 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.6□□□□□ -1.99
PTPN9P43378 AL590135.1-201ENST00000422215 156 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 AC019205.3-201ENST00000424573 156 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
PTPN9P43378 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.6□□□□□ -1.99
PTPN9P43378 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.6□□□□□ -1.99
PTPN9P43378 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.6□□□□□ -1.99
PTPN9P43378 AC016700.2-201ENST00000446011 156 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 EEF1B2P7-201ENST00000451177 676 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.6□□□□□ -1.99
PTPN9P43378 SNRPGP7-201ENST00000469016 106 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 RPL23AP70-201ENST00000483361 460 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.6□□□□□ -1.99
PTPN9P43378 AC015911.1-201ENST00000495111 156 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.6□□□□□ -1.99
PTPN9P43378 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.6□□□□□ -1.99
PTPN9P43378 CBX3P8-201ENST00000532412 525 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 SUB1P3-201ENST00000564581 315 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 MIR3199-1-201ENST00000582434 88 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC2.6□□□□□ -1.99
PTPN9P43378 7SK.7-201ENST00000603504 247 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 AC005014.2-201ENST00000607795 599 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 AC005520.5-201ENST00000613926 164 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 U4.3-201ENST00000621047 82 ntBASIC2.6□□□□□ -1.99
PTPN9P43378 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
PTPN9P43378 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
PTPN9P43378 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.6□□□□□ -1.99
PTPN9P43378 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
PTPN9P43378 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.59□□□□□ -1.99
PTPN9P43378 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
PTPN9P43378 RNU1-72P-201ENST00000362976 153 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 RNA5SP68-201ENST00000363885 119 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 U3.13-201ENST00000364804 214 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 Y_RNA.510-201ENST00000384511 114 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 RNU6-331P-201ENST00000384724 107 ntBASIC2.59□□□□□ -1.99
PTPN9P43378 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
PTPN9P43378 AC092427.1-202ENST00000430569 476 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 146.1 ms