Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PCNPP5-201ENST00000452246 481 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 AC098869.1-201ENST00000481627 292 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 SNORA31.6-201ENST00000516241 130 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 MIR2276-201ENST00000516886 89 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXD3P31249 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXD3P31249 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.5□□□□□ -2.01
HOXD3P31249 AC027288.2-201ENST00000553028 243 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.5□□□□□ -2.01
HOXD3P31249 MYL12BP1-201ENST00000569826 507 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 AL390123.1-201ENST00000603216 237 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 AL355877.2-201ENST00000603670 358 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXD3P31249 RMST_8.1-201ENST00000610287 165 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 AC007792.1-201ENST00000623023 402 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.5□□□□□ -2.01
HOXD3P31249 U6.92-201ENST00000636464 89 ntBASIC2.5□□□□□ -2.01
HOXD3P31249 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC2.5□□□□□ -2.01
HOXD3P31249 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
HOXD3P31249 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
HOXD3P31249 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXD3P31249 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 Y_RNA.27-201ENST00000362540 103 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 Y_RNA.152-201ENST00000363578 100 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 SNORD115-32-201ENST00000364079 82 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 RNU4-50P-201ENST00000364361 141 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 Y_RNA.396-201ENST00000383949 103 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 SNORD21-201ENST00000383953 95 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 RNU6-318P-201ENST00000384283 103 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 MIR153-2-201ENST00000385225 87 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 MIR767-201ENST00000390228 109 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 RNA5SP213-201ENST00000391031 106 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC096649.2-201ENST00000416186 393 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC012306.1-201ENST00000423267 114 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXD3P31249 USP9YP16-201ENST00000430287 407 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 Z98742.2-201ENST00000431564 187 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 FCF1P4-201ENST00000448326 183 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 USP9YP23-201ENST00000455085 407 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 RN7SL863P-201ENST00000462370 296 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 S100A11P2-201ENST00000467589 312 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC021205.2-201ENST00000480069 347 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AIG1P1-201ENST00000503376 148 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC2.49□□□□□ -2.01
HOXD3P31249 RNU4ATAC3P-201ENST00000516699 126 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 RNU6-56P-201ENST00000516986 93 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 RNU6-58P-201ENST00000517143 103 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.49□□□□□ -2.01
HOXD3P31249 AL161670.1-201ENST00000554348 137 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXD3P31249 AC105137.2-201ENST00000569073 466 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC125232.2-201ENST00000592457 143 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC008739.2-201ENST00000597006 317 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC006006.1-201ENST00000603082 144 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.49□□□□□ -2.01
HOXD3P31249 AC011476.5-201ENST00000615594 130 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC010205.1-201ENST00000616668 449 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AL137790.1-201ENST00000634283 177 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 AC110079.1-202ENST00000635213 138 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 SNORD98-201ENST00000636377 67 ntBASIC2.49□□□□□ -2.01
HOXD3P31249 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.49□□□□□ -2.01
HOXD3P31249 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.49□□□□□ -2.01
HOXD3P31249 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.48□□□□□ -2.01
HOXD3P31249 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
HOXD3P31249 AC092268.1-201ENST00000342691 405 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 Y_RNA.19-201ENST00000362462 99 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 RNA5SP361-201ENST00000362686 118 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 RNU6-770P-201ENST00000363929 105 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 RNU6-926P-201ENST00000384075 107 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 RNA5SP354-201ENST00000391247 136 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 RNU2-20P-201ENST00000410425 191 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 RNU6-121P-201ENST00000410525 99 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 RNA5SP229-201ENST00000410809 99 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 RNU4-47P-201ENST00000410876 114 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.48□□□□□ -2.01
HOXD3P31249 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXD3P31249 EIF1P2-201ENST00000428233 350 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 AC104332.2-201ENST00000429959 156 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 ARL5AP4-201ENST00000430731 512 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.48□□□□□ -2.01
HOXD3P31249 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXD3P31249 AC109925.1-201ENST00000478069 331 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.48□□□□□ -2.01
HOXD3P31249 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.48□□□□□ -2.01
HOXD3P31249 AC021231.3-201ENST00000558497 370 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 AC023824.2-201ENST00000566185 400 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 MIR4513-201ENST00000581077 86 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 AC096772.1-201ENST00000609146 564 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 AC243829.7-201ENST00000633081 225 ntBASIC2.48□□□□□ -2.01
HOXD3P31249 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC2.48□□□□□ -2.01
HOXD3P31249 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC2.48□□□□□ -2.01
HOXD3P31249 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HOXD3P31249 SNORD114-19-201ENST00000363072 75 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 RNU1-105P-201ENST00000363470 161 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 RNU6-879P-201ENST00000364328 108 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 Y_RNA.319-201ENST00000365138 92 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 SNORA63.7-201ENST00000365579 123 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 Y_RNA.510-201ENST00000384511 114 ntBASIC2.47□□□□□ -2.01
HOXD3P31249 MIR10B-201ENST00000385011 110 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms