Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 Y_RNA.651-201ENST00000459380 103 ntBASIC4.04□□□□□ -1.76
MSX1P28360 AC006445.2-201ENST00000510061 472 ntBASIC4.04□□□□□ -1.76
MSX1P28360 RNU6-1061P-201ENST00000516530 99 ntBASIC4.04□□□□□ -1.76
MSX1P28360 AC079587.1-201ENST00000603846 277 ntBASIC4.04□□□□□ -1.76
MSX1P28360 ZYXP1-201ENST00000617638 118 ntBASIC4.04□□□□□ -1.76
MSX1P28360 MIR6891-201ENST00000618788 93 ntBASIC4.04□□□□□ -1.76
MSX1P28360 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
MSX1P28360 Z82209.1-201ENST00000422141 2135 ntBASIC4.04□□□□□ -1.76
MSX1P28360 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.04□□□□□ -1.76
MSX1P28360 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
MSX1P28360 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
MSX1P28360 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.03□□□□□ -1.76
MSX1P28360 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.03□□□□□ -1.76
MSX1P28360 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX1P28360 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX1P28360 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
MSX1P28360 Y_RNA.114-201ENST00000363265 113 ntBASIC4.03□□□□□ -1.76
MSX1P28360 RNU1-20P-201ENST00000363314 162 ntBASIC4.03□□□□□ -1.76
MSX1P28360 Y_RNA.124-201ENST00000363339 93 ntBASIC4.03□□□□□ -1.76
MSX1P28360 RNU6-1323P-201ENST00000384025 107 ntBASIC4.03□□□□□ -1.76
MSX1P28360 SNORA37-201ENST00000384504 129 ntBASIC4.03□□□□□ -1.76
MSX1P28360 MIR548A3-201ENST00000385297 97 ntBASIC4.03□□□□□ -1.76
MSX1P28360 RNA5SP496-201ENST00000391240 109 ntBASIC4.03□□□□□ -1.76
MSX1P28360 MIR873-201ENST00000401120 77 ntBASIC4.03□□□□□ -1.76
MSX1P28360 AC023141.4-201ENST00000412031 328 ntBASIC4.03□□□□□ -1.76
MSX1P28360 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC4.03□□□□□ -1.76
MSX1P28360 RPL23AP82-202ENST00000427528 469 ntBASIC4.03□□□□□ -1.76
MSX1P28360 RPL23AP7-203ENST00000449021 469 ntBASIC4.03□□□□□ -1.76
MSX1P28360 CENPBD1P1-201ENST00000464061 469 ntBASIC4.03□□□□□ -1.76
MSX1P28360 RPL21P129-201ENST00000491732 478 ntBASIC4.03□□□□□ -1.76
MSX1P28360 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.03□□□□□ -1.76
MSX1P28360 AC023141.12-201ENST00000512399 199 ntBASIC4.03□□□□□ -1.76
MSX1P28360 RNU6-197P-201ENST00000516680 100 ntBASIC4.03□□□□□ -1.76
MSX1P28360 RN7SKP289-201ENST00000517244 295 ntBASIC4.03□□□□□ -1.76
MSX1P28360 MRPL49P2-201ENST00000521066 465 ntBASIC4.03□□□□□ -1.76
MSX1P28360 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.03□□□□□ -1.76
MSX1P28360 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC4.03□□□□□ -1.76
MSX1P28360 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
MSX1P28360 MIR5582-201ENST00000579697 68 ntBASIC4.03□□□□□ -1.76
MSX1P28360 MIR3690-201ENST00000580266 75 ntBASIC4.03□□□□□ -1.76
MSX1P28360 AC012493.2-201ENST00000595083 291 ntBASIC4.03□□□□□ -1.76
MSX1P28360 uc_338.13-201ENST00000618243 179 ntBASIC4.03□□□□□ -1.76
MSX1P28360 AC007546.2-201ENST00000623996 360 ntBASIC4.03□□□□□ -1.76
MSX1P28360 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.03□□□□□ -1.76
MSX1P28360 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
MSX1P28360 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
MSX1P28360 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC4.03□□□□□ -1.76
MSX1P28360 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.02□□□□□ -1.77
MSX1P28360 AC007496.3-201ENST00000624987 3443 ntBASIC4.02□□□□□ -1.77
MSX1P28360 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
MSX1P28360 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
MSX1P28360 Y_RNA.35-201ENST00000362601 101 ntBASIC4.02□□□□□ -1.77
MSX1P28360 SNORA31-201ENST00000362607 130 ntBASIC4.02□□□□□ -1.77
MSX1P28360 RNU6-1305P-201ENST00000364353 104 ntBASIC4.02□□□□□ -1.77
MSX1P28360 RNU6-978P-201ENST00000364371 103 ntBASIC4.02□□□□□ -1.77
MSX1P28360 Y_RNA.587-201ENST00000391210 103 ntBASIC4.02□□□□□ -1.77
MSX1P28360 RPS26P8-201ENST00000393490 348 ntBASIC4.02□□□□□ -1.77
MSX1P28360 SNORA11F-201ENST00000408237 128 ntBASIC4.02□□□□□ -1.77
MSX1P28360 AL445584.1-201ENST00000431451 330 ntBASIC4.02□□□□□ -1.77
MSX1P28360 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.02□□□□□ -1.77
MSX1P28360 AL358232.1-201ENST00000448030 501 ntBASIC4.02□□□□□ -1.77
MSX1P28360 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC4.02□□□□□ -1.77
MSX1P28360 AP000873.1-201ENST00000463987 400 ntBASIC4.02□□□□□ -1.77
MSX1P28360 SNORA31.9-201ENST00000516429 84 ntBASIC4.02□□□□□ -1.77
MSX1P28360 RNU6-1337P-201ENST00000516525 95 ntBASIC4.02□□□□□ -1.77
MSX1P28360 HSPE1P18-201ENST00000517602 280 ntBASIC4.02□□□□□ -1.77
MSX1P28360 RPL23AP97-201ENST00000568955 471 ntBASIC4.02□□□□□ -1.77
MSX1P28360 MIR3609-201ENST00000582661 80 ntBASIC4.02□□□□□ -1.77
MSX1P28360 AL137843.1-201ENST00000605078 385 ntBASIC4.02□□□□□ -1.77
MSX1P28360 MIR92B-201ENST00000607575 96 ntBASIC4.02□□□□□ -1.77
MSX1P28360 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
MSX1P28360 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC4.02□□□□□ -1.77
MSX1P28360 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
MSX1P28360 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
MSX1P28360 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.02□□□□□ -1.77
MSX1P28360 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
MSX1P28360 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
MSX1P28360 AL359837.1-201ENST00000381357 287 ntBASIC4.01□□□□□ -1.77
MSX1P28360 MIR586-201ENST00000385035 97 ntBASIC4.01□□□□□ -1.77
MSX1P28360 MIR134-201ENST00000385258 73 ntBASIC4.01□□□□□ -1.77
MSX1P28360 RNA5SP372-201ENST00000390836 115 ntBASIC4.01□□□□□ -1.77
MSX1P28360 MIR1185-2-201ENST00000408687 86 ntBASIC4.01□□□□□ -1.77
MSX1P28360 RNU2-55P-201ENST00000411146 174 ntBASIC4.01□□□□□ -1.77
MSX1P28360 RN7SKP101-201ENST00000411376 320 ntBASIC4.01□□□□□ -1.77
MSX1P28360 MLLT10P1-201ENST00000418346 262 ntBASIC4.01□□□□□ -1.77
MSX1P28360 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.01□□□□□ -1.77
MSX1P28360 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC4.01□□□□□ -1.77
MSX1P28360 RPL23AP62-201ENST00000463396 453 ntBASIC4.01□□□□□ -1.77
MSX1P28360 RNU7-116P-201ENST00000516940 62 ntBASIC4.01□□□□□ -1.77
MSX1P28360 AL160236.1-201ENST00000556317 195 ntBASIC4.01□□□□□ -1.77
MSX1P28360 AC106785.1-201ENST00000565935 262 ntBASIC4.01□□□□□ -1.77
MSX1P28360 POLR3GP1-201ENST00000594073 261 ntBASIC4.01□□□□□ -1.77
MSX1P28360 AL110115.1-201ENST00000614396 364 ntBASIC4.01□□□□□ -1.77
MSX1P28360 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC4.01□□□□□ -1.77
MSX1P28360 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
MSX1P28360 AC008555.8-201ENST00000623602 2168 ntBASIC4.01□□□□□ -1.77
MSX1P28360 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
MSX1P28360 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
MSX1P28360 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
MSX1P28360 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms