Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MIR449A-201ENST00000362113 91 ntBASIC2.35□□□□□ -2.03
MSH3P20585 SNORD50.1-201ENST00000362987 71 ntBASIC2.35□□□□□ -2.03
MSH3P20585 SNORD114-19-201ENST00000363072 75 ntBASIC2.35□□□□□ -2.03
MSH3P20585 RNU6-529P-201ENST00000363383 104 ntBASIC2.35□□□□□ -2.03
MSH3P20585 RNU6-1141P-201ENST00000364520 107 ntBASIC2.35□□□□□ -2.03
MSH3P20585 Y_RNA.813-201ENST00000364639 102 ntBASIC2.35□□□□□ -2.03
MSH3P20585 Y_RNA.431-201ENST00000384086 102 ntBASIC2.35□□□□□ -2.03
MSH3P20585 Y_RNA.460-201ENST00000384255 102 ntBASIC2.35□□□□□ -2.03
MSH3P20585 RNU2-23P-201ENST00000410545 195 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AC007064.1-201ENST00000412238 351 ntBASIC2.35□□□□□ -2.03
MSH3P20585 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.35□□□□□ -2.03
MSH3P20585 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.35□□□□□ -2.03
MSH3P20585 EIF4EP2-201ENST00000422816 654 ntBASIC2.35□□□□□ -2.03
MSH3P20585 Z98742.2-201ENST00000431564 187 ntBASIC2.35□□□□□ -2.03
MSH3P20585 UBE2V1P7-201ENST00000446395 340 ntBASIC2.35□□□□□ -2.03
MSH3P20585 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
MSH3P20585 MTCO3P10-201ENST00000455912 772 ntBASIC2.35□□□□□ -2.03
MSH3P20585 RPL30P15-201ENST00000457129 321 ntBASIC2.35□□□□□ -2.03
MSH3P20585 RPL36AP48-201ENST00000485521 314 ntBASIC2.35□□□□□ -2.03
MSH3P20585 HMGN1P13-201ENST00000505795 138 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AC091874.1-201ENST00000511402 339 ntBASIC2.35□□□□□ -2.03
MSH3P20585 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.35□□□□□ -2.03
MSH3P20585 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.35□□□□□ -2.03
MSH3P20585 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.35□□□□□ -2.03
MSH3P20585 RNA5SP384-201ENST00000516615 116 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AC109329.1-201ENST00000518744 317 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AC109329.2-201ENST00000519658 482 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.35□□□□□ -2.03
MSH3P20585 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.35□□□□□ -2.03
MSH3P20585 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.35□□□□□ -2.03
MSH3P20585 AC109446.1-201ENST00000566172 220 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AC105137.2-201ENST00000569073 466 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.35□□□□□ -2.03
MSH3P20585 MIR4273-201ENST00000582824 84 ntBASIC2.35□□□□□ -2.03
MSH3P20585 MIR3616-201ENST00000584070 92 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AC067747.1-201ENST00000608026 250 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AL159153.1-201ENST00000619688 317 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AC007792.1-201ENST00000623023 402 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AL359854.1-201ENST00000614203 1594 ntBASIC2.35□□□□□ -2.03
MSH3P20585 AC009541.1-201ENST00000438279 2662 ntBASIC2.35□□□□□ -2.03
MSH3P20585 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.34□□□□□ -2.03
MSH3P20585 Y_RNA.2-201ENST00000362330 96 ntBASIC2.34□□□□□ -2.03
MSH3P20585 RNU4-82P-201ENST00000362443 140 ntBASIC2.34□□□□□ -2.03
MSH3P20585 Y_RNA.123-201ENST00000363338 102 ntBASIC2.34□□□□□ -2.03
MSH3P20585 RNU6-1285P-201ENST00000363480 105 ntBASIC2.34□□□□□ -2.03
MSH3P20585 RNU4-76P-201ENST00000364509 141 ntBASIC2.34□□□□□ -2.03
MSH3P20585 RNU6-331P-201ENST00000384724 107 ntBASIC2.34□□□□□ -2.03
MSH3P20585 SNORA80E-201ENST00000384744 137 ntBASIC2.34□□□□□ -2.03
MSH3P20585 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.34□□□□□ -2.03
MSH3P20585 AC138623.1-201ENST00000418060 216 ntBASIC2.34□□□□□ -2.03
MSH3P20585 AC097463.2-201ENST00000421074 142 ntBASIC2.34□□□□□ -2.03
MSH3P20585 USMG5P1-201ENST00000425964 177 ntBASIC2.34□□□□□ -2.03
MSH3P20585 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.34□□□□□ -2.03
MSH3P20585 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.34□□□□□ -2.03
MSH3P20585 AC011753.1-201ENST00000451001 220 ntBASIC2.34□□□□□ -2.03
MSH3P20585 FO393415.2-201ENST00000480085 343 ntBASIC2.34□□□□□ -2.03
MSH3P20585 AC005741.1-201ENST00000511094 432 ntBASIC2.34□□□□□ -2.03
MSH3P20585 SMURF2P1-201ENST00000514992 481 ntBASIC2.34□□□□□ -2.03
MSH3P20585 PRELID2P1-201ENST00000552837 301 ntBASIC2.34□□□□□ -2.03
MSH3P20585 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.34□□□□□ -2.03
MSH3P20585 AC103810.6-201ENST00000606708 136 ntBASIC2.34□□□□□ -2.03
MSH3P20585 AC046143.2-201ENST00000609789 160 ntBASIC2.34□□□□□ -2.03
MSH3P20585 AL160413.1-201ENST00000622780 310 ntBASIC2.34□□□□□ -2.03
MSH3P20585 AC022140.2-201ENST00000623500 188 ntBASIC2.34□□□□□ -2.03
MSH3P20585 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.34□□□□□ -2.03
MSH3P20585 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.34□□□□□ -2.03
MSH3P20585 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
MSH3P20585 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
MSH3P20585 AC002543.1-201ENST00000299783 1954 ntBASIC2.33□□□□□ -2.04
MSH3P20585 Y_RNA.187-201ENST00000363918 113 ntBASIC2.33□□□□□ -2.04
MSH3P20585 RNU6-694P-201ENST00000364071 147 ntBASIC2.33□□□□□ -2.04
MSH3P20585 Y_RNA.315-201ENST00000365117 102 ntBASIC2.33□□□□□ -2.04
MSH3P20585 Y_RNA.579-201ENST00000390939 94 ntBASIC2.33□□□□□ -2.04
MSH3P20585 SNORA75.6-201ENST00000391318 127 ntBASIC2.33□□□□□ -2.04
MSH3P20585 RN7SKP61-201ENST00000410642 295 ntBASIC2.33□□□□□ -2.04
MSH3P20585 CYCSP48-201ENST00000417124 323 ntBASIC2.33□□□□□ -2.04
MSH3P20585 BX276092.3-201ENST00000424182 230 ntBASIC2.33□□□□□ -2.04
MSH3P20585 AC078809.1-201ENST00000427601 140 ntBASIC2.33□□□□□ -2.04
MSH3P20585 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.33□□□□□ -2.04
MSH3P20585 EEF1B2P7-201ENST00000451177 676 ntBASIC2.33□□□□□ -2.04
MSH3P20585 AC079354.2-201ENST00000453523 154 ntBASIC2.33□□□□□ -2.04
MSH3P20585 AC112771.1-201ENST00000463581 102 ntBASIC2.33□□□□□ -2.04
MSH3P20585 AC090096.1-201ENST00000489168 390 ntBASIC2.33□□□□□ -2.04
MSH3P20585 SCARNA16.2-201ENST00000516520 172 ntBASIC2.33□□□□□ -2.04
MSH3P20585 MIR5696-201ENST00000578474 85 ntBASIC2.33□□□□□ -2.04
MSH3P20585 MIR4765-201ENST00000585007 77 ntBASIC2.33□□□□□ -2.04
MSH3P20585 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.33□□□□□ -2.04
MSH3P20585 AC009318.2-201ENST00000610917 651 ntBASIC2.33□□□□□ -2.04
MSH3P20585 SNORA43.4-201ENST00000629559 138 ntBASIC2.33□□□□□ -2.04
MSH3P20585 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
MSH3P20585 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
MSH3P20585 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
MSH3P20585 MIR21-201ENST00000362134 72 ntBASIC2.32□□□□□ -2.04
MSH3P20585 Y_RNA.40-201ENST00000362645 93 ntBASIC2.32□□□□□ -2.04
MSH3P20585 RNU6-890P-201ENST00000384121 107 ntBASIC2.32□□□□□ -2.04
MSH3P20585 RNU6-1072P-201ENST00000384703 107 ntBASIC2.32□□□□□ -2.04
MSH3P20585 RNU6-443P-201ENST00000384780 107 ntBASIC2.32□□□□□ -2.04
MSH3P20585 MIR144-201ENST00000384886 86 ntBASIC2.32□□□□□ -2.04
MSH3P20585 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.32□□□□□ -2.04
MSH3P20585 MICF-203ENST00000432679 129 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms