Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU6-19P-201ENST00000384718 107 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 RNU6-443P-201ENST00000384780 107 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 RNU6-1106P-201ENST00000390845 107 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 RPS29P13-201ENST00000402041 169 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXD4P09016 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXD4P09016 AC096638.1-201ENST00000444678 216 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 IFNA11P-201ENST00000446352 526 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXD4P09016 Y_RNA.632-201ENST00000459189 102 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.11□□□□□ -2.07
HOXD4P09016 AC023141.11-201ENST00000508864 202 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 PTP4A1P4-201ENST00000512479 322 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 SNORA31.6-201ENST00000516241 130 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 RNA5SP281-201ENST00000516504 135 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 RNU6-1016P-201ENST00000516689 94 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 SCARNA3-201ENST00000517097 143 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.11□□□□□ -2.07
HOXD4P09016 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.11□□□□□ -2.07
HOXD4P09016 AL133215.3-201ENST00000609801 448 ntBASIC2.11□□□□□ -2.07
HOXD4P09016 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC2.11□□□□□ -2.07
HOXD4P09016 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.11□□□□□ -2.07
HOXD4P09016 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
HOXD4P09016 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXD4P09016 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXD4P09016 RNU6-1059P-201ENST00000363752 98 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 Y_RNA.384-201ENST00000383909 102 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 Y_RNA.482-201ENST00000384377 111 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 SNORD116-29-201ENST00000384516 83 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 Y_RNA.535-201ENST00000384612 99 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 MIR1289-2-201ENST00000408360 111 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 RNU6-370P-201ENST00000411008 104 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 RNU6-293P-201ENST00000411259 106 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXD4P09016 AL591806.2-201ENST00000433122 173 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 AC004383.1-201ENST00000438135 289 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 PCMTD1P1-201ENST00000455560 355 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 AC080013.2-201ENST00000460866 323 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 RPL9P9-202ENST00000466501 579 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 AC108210.2-201ENST00000503681 201 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 RNU1-54P-201ENST00000517181 120 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 SNORA31.23-201ENST00000517219 133 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 HSPE1P18-201ENST00000517602 280 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXD4P09016 APOOP3-201ENST00000536787 586 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXD4P09016 CPDP1-201ENST00000579660 283 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 AC124303.1-201ENST00000605703 360 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 MIR3976-201ENST00000606807 139 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 AC019193.3-201ENST00000609144 554 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 AC046143.2-201ENST00000609789 160 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 MTND4LP32-201ENST00000636111 270 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 AC131280.1-202ENST00000624067 4211 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXD4P09016 RBBP8P1-201ENST00000449447 1844 ntBASIC2.1□□□□□ -2.07
HOXD4P09016 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
HOXD4P09016 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
HOXD4P09016 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
HOXD4P09016 AC080100.1-201ENST00000624239 5356 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
HOXD4P09016 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.07
HOXD4P09016 SNORD114-1-201ENST00000362705 72 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU6-593P-201ENST00000364716 112 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU4-52P-201ENST00000384209 138 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU6-1297P-201ENST00000384415 104 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU6-843P-201ENST00000384454 104 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU6-790P-201ENST00000384479 105 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU6-692P-201ENST00000384496 107 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU6-748P-201ENST00000384648 107 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU6-220P-201ENST00000390919 107 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU6-482P-201ENST00000391068 107 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.09□□□□□ -2.07
HOXD4P09016 AL133475.1-201ENST00000404414 305 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU6-1140P-201ENST00000410517 106 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 AC074117.2-201ENST00000417130 397 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 USP9YP30-201ENST00000430729 455 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 AL133396.1-201ENST00000432048 687 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 AL591043.1-201ENST00000432461 424 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 HMGN2P3-201ENST00000433603 273 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 HMGN2P5-201ENST00000436882 273 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 AC243964.1-201ENST00000441814 261 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU7-26P-201ENST00000458980 63 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 AP001025.1-201ENST00000486139 332 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 AC026782.1-201ENST00000512952 449 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU6-612P-201ENST00000516909 102 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 RNU6-1213P-201ENST00000517075 94 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 AC010186.2-204ENST00000537668 439 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 MIR3199-1-201ENST00000582434 88 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 MIR4448-201ENST00000584360 86 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 BNIP3P16-201ENST00000589779 534 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 AC018462.2-201ENST00000605375 395 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 AC022140.2-201ENST00000623500 188 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 MIR3529-201ENST00000637713 78 ntBASIC2.09□□□□□ -2.07
HOXD4P09016 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
HOXD4P09016 AC006026.1-201ENST00000444025 1803 ntBASIC2.09□□□□□ -2.08
HOXD4P09016 KPNA2P1-201ENST00000458289 1591 ntBASIC2.09□□□□□ -2.08
HOXD4P09016 AC073544.1-201ENST00000600110 1595 ntBASIC2.09□□□□□ -2.08
HOXD4P09016 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
HOXD4P09016 AL359854.1-201ENST00000614203 1594 ntBASIC2.08□□□□□ -2.08
HOXD4P09016 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 139.2 ms