Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 AC108706.1-201ENST00000611053 297 ntBASIC0.63□□□□□ -2.31
SDCBPO00560 7SK.8-201ENST00000612110 250 ntBASIC0.63□□□□□ -2.31
SDCBPO00560 PCGEM1.1-201ENST00000613431 131 ntBASIC0.63□□□□□ -2.31
SDCBPO00560 7SK.11-201ENST00000615477 250 ntBASIC0.63□□□□□ -2.31
SDCBPO00560 7SK.13-201ENST00000622040 250 ntBASIC0.63□□□□□ -2.31
SDCBPO00560 AC006927.4-201ENST00000639187 543 ntBASIC0.63□□□□□ -2.31
SDCBPO00560 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC0.63□□□□□ -2.31
SDCBPO00560 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.62□□□□□ -2.31
SDCBPO00560 HSBP1P2-201ENST00000299671 229 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 RNU5F-6P-201ENST00000362979 116 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
SDCBPO00560 RNU6-906P-201ENST00000384700 70 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 AL355143.1-201ENST00000407101 841 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 MTCO1P21-201ENST00000416634 589 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 AC060773.1-201ENST00000421698 310 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 AC119618.1-201ENST00000434191 222 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 AL163973.1-201ENST00000484753 577 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.62□□□□□ -2.31
SDCBPO00560 AC091874.1-201ENST00000511402 339 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 RNA5SP503-201ENST00000517047 117 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 CYCSP23-201ENST00000519781 313 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 AC022616.3-201ENST00000523940 148 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 AP001893.2-201ENST00000526949 202 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.62□□□□□ -2.31
SDCBPO00560 AC008015.1-201ENST00000555505 465 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 AC090888.2-201ENST00000559765 1144 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 AC136932.1-201ENST00000574771 208 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 HMGN1P30-201ENST00000589286 268 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 AC008945.2-201ENST00000606056 604 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC0.62□□□□□ -2.31
SDCBPO00560 AC008147.4-201ENST00000617570 1204 ntBASIC0.62□□□□□ -2.31
SDCBPO00560 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.62□□□□□ -2.31
SDCBPO00560 Y_RNA.324-201ENST00000365165 102 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 SNORA29-201ENST00000384183 140 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 SNORA36A-201ENST00000384221 132 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 RNU6-45P-201ENST00000384471 107 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
SDCBPO00560 SNORA26.3-201ENST00000391119 136 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 Y_RNA.608-201ENST00000410647 95 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 HMGN1P14-201ENST00000412459 517 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC0.61□□□□□ -2.31
SDCBPO00560 ELOCP4-201ENST00000420090 333 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 AC013410.2-201ENST00000422627 201 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 MTND5P15-201ENST00000434246 349 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 HSPE1P13-201ENST00000451143 297 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 AC091435.1-201ENST00000505442 584 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 AC112206.4-201ENST00000515142 405 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 RNU6-377P-201ENST00000515965 102 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 SCARNA24.1-201ENST00000516465 137 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 RNU5F-4P-201ENST00000516581 114 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 RNA5SP384-201ENST00000516615 116 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 RNU6-856P-201ENST00000516959 98 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.61□□□□□ -2.31
SDCBPO00560 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.61□□□□□ -2.31
SDCBPO00560 MIR4653-201ENST00000585107 83 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 AL158050.2-201ENST00000605336 568 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 AL049777.1-201ENST00000622740 518 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 MIR6767-201ENST00000637302 66 ntBASIC0.61□□□□□ -2.31
SDCBPO00560 Y_RNA.18-201ENST00000362461 102 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 RNA5SP432-201ENST00000362480 116 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 RNU1-76P-201ENST00000362903 159 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 U3.9-201ENST00000363823 204 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 RNU1-36P-201ENST00000365130 165 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 SNORD115-7-201ENST00000365306 82 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 RNU6-877P-201ENST00000383868 107 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 RNU6-418P-201ENST00000384035 107 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 RNU6-116P-201ENST00000384042 109 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 RNU6-1245P-201ENST00000411130 106 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 AC006461.1-201ENST00000412637 326 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 AC137499.1-201ENST00000427602 88 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 ISCA1P6-201ENST00000427740 390 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 MTCO3P29-201ENST00000432119 779 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 SNAP23P1-201ENST00000433229 246 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 AC084290.1-201ENST00000434995 374 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.6□□□□□ -2.31
SDCBPO00560 GTF2IP13-201ENST00000438487 386 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 GAPDHP17-201ENST00000449858 1001 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 AL009048.1-201ENST00000450437 298 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 AC013470.1-201ENST00000453438 462 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 AC034244.1-201ENST00000507687 207 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.6□□□□□ -2.31
SDCBPO00560 SCARNA16.2-201ENST00000516520 172 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 HSPE1P4-201ENST00000550617 308 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC0.6□□□□□ -2.31
SDCBPO00560 MIR3124-201ENST00000582636 67 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 BNIP3P16-201ENST00000589779 534 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 AL391646.1-201ENST00000603860 190 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 AC107304.1-201ENST00000604229 296 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 AC018645.2-201ENST00000609151 472 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.6□□□□□ -2.31
SDCBPO00560 AC009159.2-201ENST00000617603 606 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 AC099654.13-201ENST00000639774 207 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 ATP8A2P2-201ENST00000437678 1568 ntBASIC0.6□□□□□ -2.31
SDCBPO00560 MTND4P14-201ENST00000435799 1354 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 MIR373-201ENST00000362273 69 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 MIR96-201ENST00000362288 78 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 U3.4-201ENST00000363352 213 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 MIR100-201ENST00000385259 80 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 POLR2J4-204ENST00000418424 324 ntBASIC0.59□□□□□ -2.31
SDCBPO00560 RPL23AP95-201ENST00000426806 265 ntBASIC0.59□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms