Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 AL356575.1-201ENST00000603008 283 ntBASIC3.17□□□□□ -1.9
PCDHGA3Q9Y5H0 AC016727.2-201ENST00000603988 621 ntBASIC3.17□□□□□ -1.9
PCDHGA3Q9Y5H0 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
PCDHGA3Q9Y5H0 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
PCDHGA3Q9Y5H0 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
PCDHGA3Q9Y5H0 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.17□□□□□ -1.9
PCDHGA3Q9Y5H0 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 Y_RNA.40-201ENST00000362645 93 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 Y_RNA.158-201ENST00000363651 101 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 SNORD115-8-201ENST00000363856 82 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 SNORD115-38-201ENST00000365037 82 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 RNU6-308P-201ENST00000390957 107 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 AC114482.1-201ENST00000418010 247 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 MRPS18CP6-201ENST00000423587 223 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 RPS12P18-201ENST00000442381 270 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 CENPBD1P1-201ENST00000464061 469 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 ANXA2P1-201ENST00000505539 926 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 SNORA40.14-201ENST00000516543 86 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 SNORA70.19-201ENST00000516717 90 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 SNORA31.16-201ENST00000516773 139 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 RN7SKP272-201ENST00000516988 232 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 UQCRB-202ENST00000517523 515 ntTSL 2 BASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 ANP32BP3-201ENST00000559213 706 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 AC022432.1-201ENST00000595739 310 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 RPL30P11-203ENST00000598995 310 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 AL355802.3-201ENST00000607571 545 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 AC069294.1-201ENST00000608397 350 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 MIR1244-1-201ENST00000612829 85 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 MIR1244-3-201ENST00000635744 85 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 MIR1244-2-201ENST00000636449 85 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 MIR1244-4-202ENST00000636813 85 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 AC008264.2-201ENST00000610193 3731 ntBASIC3.16□□□□□ -1.9
PCDHGA3Q9Y5H0 AC005592.1-201ENST00000566527 1640 ntBASIC3.15□□□□□ -1.9
PCDHGA3Q9Y5H0 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 AC069528.2-201ENST00000624849 1991 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 Y_RNA.162-201ENST00000363683 102 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 RNU4-42P-201ENST00000364738 142 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 Y_RNA.496-201ENST00000384444 101 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 MIR628-201ENST00000385229 95 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 MRPL42P3-201ENST00000401492 326 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 RN7SKP123-201ENST00000410732 291 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 MTCO3P29-201ENST00000432119 779 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 Z82188.1-201ENST00000436709 154 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 GSTA11P-201ENST00000452866 669 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 AC090617.3-201ENST00000573670 475 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 AL078605.1-201ENST00000603529 500 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 RPL17P51-201ENST00000605218 238 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 PART1_1.1-201ENST00000611761 217 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 AL162274.2-201ENST00000614406 332 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 AL449363.1-201ENST00000617815 186 ntBASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
PCDHGA3Q9Y5H0 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 RNA5SP197-201ENST00000363357 119 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 Y_RNA.148-201ENST00000363557 117 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 Y_RNA.319-201ENST00000365138 92 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 SNORA36A-201ENST00000384221 132 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 MIR208B-201ENST00000401172 77 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 Y_RNA.592-201ENST00000410274 109 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 AC073901.1-201ENST00000462471 408 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 AC093852.1-201ENST00000503587 266 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 RNA5SP341-201ENST00000516261 117 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 SCARNA15.1-201ENST00000516384 125 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 EIF4BP1-201ENST00000554881 351 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 AL162713.1-201ENST00000604480 262 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 AC007485.1-201ENST00000616755 206 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 AC087588.2-201ENST00000617667 426 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 U2.1-201ENST00000618978 145 ntBASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
PCDHGA3Q9Y5H0 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 MIR422A-201ENST00000362286 90 ntBASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 Y_RNA.106-201ENST00000363189 100 ntBASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 U3.9-201ENST00000363823 204 ntBASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 RNU6-280P-201ENST00000364145 104 ntBASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 Y_RNA.424-201ENST00000384063 103 ntBASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 AL513477.1-202ENST00000417061 214 ntBASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 USP9YP16-201ENST00000430287 407 ntBASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 AL160004.2-201ENST00000432935 350 ntBASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.13□□□□□ -1.91
PCDHGA3Q9Y5H0 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms