Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNU6-1045P-201ENST00000516321 107 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-567P-201ENST00000516746 107 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 RN7SKP57-201ENST00000517248 293 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 AC091144.1-201ENST00000519573 138 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 AC007536.1-201ENST00000533382 349 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 AL109809.4-201ENST00000603520 2185 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 AL161756.2-201ENST00000604597 246 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 AL159153.1-201ENST00000619688 317 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 UCA1.1-201ENST00000620952 75 ntBASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
LIMCH1Q9UPQ0 Y_RNA.158-201ENST00000363651 101 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-525P-201ENST00000363685 104 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 SNORD115-32-201ENST00000364079 82 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 SNORA29-201ENST00000384183 140 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-738P-201ENST00000384531 106 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 SNORA26.3-201ENST00000391119 136 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 U3.26-201ENST00000391236 204 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AL358453.1-201ENST00000422522 250 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 MRPS18CP6-201ENST00000423587 223 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AC104332.2-201ENST00000429959 156 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AC092423.1-201ENST00000430165 186 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 snoU13.14-201ENST00000459372 104 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 RPL36AP48-201ENST00000485521 314 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AC105758.1-201ENST00000506038 399 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AC091874.1-201ENST00000511402 339 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-327P-201ENST00000516270 127 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 Y_RNA.706-201ENST00000516933 99 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 RNU6-56P-201ENST00000516986 93 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 MRPS36P4-201ENST00000534436 298 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 MIR3136-201ENST00000583498 78 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 RPL23AP78-201ENST00000599928 470 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 RPL23AP88-201ENST00000605759 454 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AL359198.2-201ENST00000611836 194 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 RMST_6.1-201ENST00000611980 203 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AC007485.1-201ENST00000616755 206 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 SNORA43.4-201ENST00000629559 138 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AL606534.2-204ENST00000635008 178 ntBASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
LIMCH1Q9UPQ0 AC073346.2-201ENST00000624724 2058 ntBASIC3.21□□□□□ -1.89
LIMCH1Q9UPQ0 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 RNU5B-2P-201ENST00000363036 113 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 Y_RNA.145-201ENST00000363527 102 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 RNU4-56P-201ENST00000364700 142 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-1083P-201ENST00000384022 107 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 UBA52P6-201ENST00000399822 382 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 MIR190B-201ENST00000401119 79 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 AL133475.1-201ENST00000404414 305 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 RPL23AP83-201ENST00000434984 473 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 HMGN1P10-201ENST00000474557 553 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 AC090525.1-201ENST00000479116 478 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 AC079598.5-201ENST00000547460 117 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 AL360085.1-201ENST00000604713 532 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 AC243829.7-201ENST00000633081 225 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 AC005592.1-201ENST00000566527 1640 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 AL359854.1-201ENST00000614203 1594 ntBASIC3.21□□□□□ -1.9
LIMCH1Q9UPQ0 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-1159P-201ENST00000362933 107 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 U8.9-201ENST00000365667 134 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 Y_RNA.405-201ENST00000383979 100 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 SNORA18.3-201ENST00000384122 132 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 Y_RNA.451-201ENST00000384200 100 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 Y_RNA.524-201ENST00000384564 100 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 Y_RNA.561-201ENST00000384694 100 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 MIR491-201ENST00000384877 84 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 SNORA11.2-201ENST00000408318 127 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 Y_RNA.605-201ENST00000410577 105 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 AC009296.1-201ENST00000443146 155 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 AIG1P1-201ENST00000503376 148 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 RNU6-911P-201ENST00000516523 104 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 SCARNA11.3-201ENST00000517276 130 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 MIR5195-201ENST00000583555 115 ntBASIC3.2□□□□□ -1.9
LIMCH1Q9UPQ0 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms